Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu03g1230 | ATGATGGGCGAACAAATTCAAGCGCCTTCTAGTCCTCGAGATGGTGAGAATGTTTCTATCACTCAGGGGTTGCCAAAGACCAATGAAGTCAAATCGGGTACATTGATGGGTGTATTTATCCCATGCTTGCAGAACATATTGGGAATCATTTACTATATTCGATTTTCTTGGATTGTTGGCATGGCTGGCATTGGTGAGTCATTAGTGCTGGTGGCGTTTTGTGGTTTATGTACGTTCTTGACTTCGATTTCACTAAGTGCTATTGCAACTAATGGAGCTATGAAGGGTGGGGGTCCATATTATCTGATAGGTCGTGCCCTTGGTCCAGAGGTTGGAGTTAGCATTGGGCTATGTTTCTTTCTCGGAAATGCAGTTGCTGGTGCGCTTTATGTGTTGGGAGCTGTAGAAACATTTTTGAATGCTGTCCCAGCTGCAGGGATTTTCAGAGAGACTGTAACAAAAGTTAACGGAACAACTGTTGCAGAGCCAATACAAAGCCCAAGTTCACATGACTTGCAAGTTTATGGCATTATTGTGACGATTCTTCTGTGCTTCATTGTGTTTGGTGGTGTGAAAATGATTAATAGGGTTGCTCCTGCTTTCCTTATTCCAGTCTTGTTCTCAGTACTTTGCATATTTCTTGGAATTTTTCTGGCAAGGAAAAACGACCCAGCAGAGGGCGTCACAGGTTTGAGTTTGGAATCTTTTAAAGAAAATTGGAGTTCTGATTATCAGATGACTAATAGTGCTGGAATTCCTGATCCTTTTGGAAAAGTATACTGGAATTTCAATGCTTTGGTTGGTCTTTTTTTCCCTGCTGTGACGGGAATAATGGCTGGTTCTAATAGATCGGCTTCACTGAAGGATACTCAGCGTTCAATTCCTATTGGAACATTGGCTGCAACTCTAACAACAACTGCATTGTATCTGATCTCTGTTTTGCTGTTTGGAGCACTGGCAACCAGAGAGAAATTGTTGACAGATAGGCTTCTTACTGCTACGGTTGCTTGGCCTTTCCCAGCAATTATTTACGTTGGAATTATTTTATCAACCCTTGGAGCTGCCCTTCAGAGCCTGACAGGAGCCCCTCGCTTACTAGCAGCCATAGCCAATGATGATATATTGCCTATTCTAAACTATTTTAAAGTAGCAGATGGCAGTGAGCCATACTTTGCGACCCTCTTTACTGCATTTCTCTGCATCGGATGTGTCATTATTGGGAATCTTGATCTTATCACACCAACTGTAACCATGTTTTTCCTACTGTGTTATGCTGGTGTGAACTTATCCTGCTTCCTTTTGGATCTACTAGACGCTCCCAGTTGGCGTCCACGCTGGAGATTCCACCACTGGAGCCTTTCTCTTCTTGGAGCATCACTTTGTGTAGTGATAATGTTCTTGATCTCGTGGTCATTCACGATAGTGTCTCTAGCCCTTGCAAGCCTTATATATTATTATGTGTGCCTTAGAGGCAAGGCTGGAGACTGGGGTGATGGTTTCAAGAGTGCATATTTCCAACTTGCTCTCCGTAGTCTTCGTTCGCTTGGAGCGAGCCAAGTCCACCCAAAGAATTGGTATCCCATTCCCTTGATATTTTGCCGGCCATGGGGAAAGCTGCCCGAAAATGTACCATGTCACCCTAAACTTGCAGACTTTGCAAACTGCATGAAGAAAAAAGGCCGGGGAATGTCCATATTTGTCTCCATACTAGATGGAGATTACCATGAACGGGTTGAAGATGCAAAAGCTGCCTGCAAGCAGCTTGCTACATATATCGATTACAAACGTTGTGAAGGTGTGGCAGAGATTGTTGTGGCTCCCACAATGTCTGAAGGTTTCCGGGGGATTGTTCAGACGATGGGTCTTGGAAATCTCAAGCCGAATATTGTAGTCATGCGATACCCTGAAATTTGGCGTCGTGAAAACCTAATAGAAATTCCAGCTACTTTTGTTGGAATAATCAATGACTGCATTGATGCCAACAAGGCAGTTGTCATTGTTAAGGGTCTGGATGAATGGCCTAATGAATTTCAAAGGCAATATGGAACTATAGACTTGTATTGGATTGTGAGAGATGGTGGTCTTATGCTTCTCCTCTCTCAGCTTCTCCTTACAAAGGAGAGCTTTGAGAGTTGTAAGATTCAGGTGTTCTGCATTGCAGAGGAGGATTCTGACGCGGAGGGCCTCAAAGCTGATGTCAAAAAGTTTTTGTATGATCTTCGGATGCAAGCTGAGGTGATTGTTATAACAATAAAATCATGGGACACACAAGTGGAGGGCGCGCAACCAGACGAATCAATGGAAGCCTTCAGTGCTGCTCAAGGGAGGATTGCTAGTTATTTAAGTGAAATGAAGGCAACAGCTGAGAGCAGAGGAACCACACTCATGGCTGATGGGAAGCCTGTGAGTGTGAATGAGCAGCAGGTTGAGAAGTTTCTAAATACAACTCTCAAGTTGAACTCAACGATTCTAAGATACTCCAGGATGGCTGCGGTTGTGCTCGTCAGCCTCCCACCACCCCCTGTCAACCATCCTGCTTACTTCTATATGGAGTACTTGGATTTGTTGGTTGAGAATGTGCCTAGGCTCTTGATCGTAAGAGGATACCGTCGAGATGTCGTAACTTTGTTCACCTAG | 2637 | 44.03 | MMGEQIQAPSSPRDGENVSITQGLPKTNEVKSGTLMGVFIPCLQNILGIIYYIRFSWIVGMAGIGESLVLVAFCGLCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLNAVPAAGIFRETVTKVNGTTVAEPIQSPSSHDLQVYGIIVTILLCFIVFGGVKMINRVAPAFLIPVLFSVLCIFLGIFLARKNDPAEGVTGLSLESFKENWSSDYQMTNSAGIPDPFGKVYWNFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYLISVLLFGALATREKLLTDRLLTATVAWPFPAIIYVGIILSTLGAALQSLTGAPRLLAAIANDDILPILNYFKVADGSEPYFATLFTAFLCIGCVIIGNLDLITPTVTMFFLLCYAGVNLSCFLLDLLDAPSWRPRWRFHHWSLSLLGASLCVVIMFLISWSFTIVSLALASLIYYYVCLRGKAGDWGDGFKSAYFQLALRSLRSLGASQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHERVEDAKAACKQLATYIDYKRCEGVAEIVVAPTMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLIEIPATFVGIINDCIDANKAVVIVKGLDEWPNEFQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEGLKADVKKFLYDLRMQAEVIVITIKSWDTQVEGAQPDESMEAFSAAQGRIASYLSEMKATAESRGTTLMADGKPVSVNEQQVEKFLNTTLKLNSTILRYSRMAAVVLVSLPPPPVNHPAYFYMEYLDLLVENVPRLLIVRGYRRDVVTLFT | 878 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 6927630 | 6939687 | - | CmPI595203_03g012300.1 | Cmu03g1230 | 412016 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu03g1230 | 878 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Cmu03g1230 | 878 | PANTHER | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS | 21 | 877 | IPR004842 | GO:0006811(InterPro)|GO:0006884(PANTHER)|GO:0015377(InterPro)|GO:0015379(PANTHER)|GO:0016020(InterPro)|GO:0055064(PANTHER)|GO:0055075(PANTHER)|GO:1902476(PANTHER)|GO:1990573(PANTHER) | |
| Cmu03g1230 | 878 | Pfam | Solute carrier family 12 | 677 | 877 | IPR018491 | GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0022857(InterPro) | |
| Cmu03g1230 | 878 | Pfam | Solute carrier family 12 | 547 | 668 | IPR018491 | GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0022857(InterPro) | |
| Cmu03g1230 | 878 | NCBIfam | K-Cl cotransporter | 3 | 878 | IPR004842 | GO:0006811(InterPro)|GO:0015377(InterPro)|GO:0016020(InterPro) | |
| Cmu03g1230 | 878 | Gene3D | Amino acid/polyamine transporter I | 30 | 495 | - | - | |
| Cmu03g1230 | 878 | FunFam | Cation-chloride cotransporter 1 | 31 | 495 | - | - | |
| Cmu03g1230 | 878 | Pfam | Amino acid permease | 37 | 505 | IPR004841 | GO:0016020(InterPro)|GO:0055085(InterPro) |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu03g1230 | K14427 | - | csv:101216218 | 1680.23 |