Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1239 ATGTTGGAACACCTCGCCCGAGAATCAGACGGGGAGCTTGGTTACGAAGCAGCTGTTAATTCAAATTCCAGTCAAAATTCTATGAGCAGTGAGAGTTGTAGTAGTTTCAGTCGTCTCTCCTTTGATGCTGCCATTGATTTACCTACCTCTCGATCTTCGCCGGAGAGTCTTGATTTGAAGCCTCATCGATCGTCTGATTTCGCTTACTCCGCTATTCGTCGACGGAAATCTAAGCTTACCTTTCGTGATTTTCGACTTCTCCGTCGGATTGGTGCTGGCGACATTGGGACTGTTTATTTATGTCAGCTGAGGAAGCTGAGCGAGGGGTGTTATGAGGAGGAAGATGATGATCCGTGTTTGTATGCGATGAAAGTTGTGGATAAAGAAGCGTTGGAATTGAAGAAGAAAGTGCAGAGGGCGGAAATGGAGAGGAGAATATTGAAGATGCTGGATCATCCGTTTTTGCCTACACTCTACGCTGAGTTTGAGGCTTCTCATTTTTCTTGTATTGTTATGGAGTTCTGTTCCGGCGGCGATTTGCATTCTCTCCGCCATAAACAGCCGCGGAAACGCTTCTCTCTCACTTCCGCGAGGTTTTATGCAGCTGAAGTTCTTGTTGCTTTAGAGTACCTTCATATGCTTGGAATCATTTACAGAGACCTTAAACCGGAGAATGTTCTCGTCCGATCAGACGGTCACATTATGTTATCGGATTTCGATTTATCTCTCTGCTCCGACGCCACCCCTGCCGTTGAATCACCCAACTCCTCCCCTACCACGGCGTTTCCCGACGCAACGGCCTACCCCAGAACCAACGCTGCCGTTTCCGCCGCCTCCACAACTCCTTTTTCCTGCCTCTACAACCGTCTTTTCCGGTCGCGCAAGGTCCAAACTCTGACCCCCAACTGGCTCTTTGTCGCAGAGCCCGTTTCCGCTCGGTCCTGCTCTTTCGTCGGTACCCACGAGTACGTCTCGCCGGAAGTTGCCGCCGGCGGGTCCCACGGTAACGCCGTTGACTGGTGGGCCTTTGGAATATTTCTCTACGAGTTGATCTACGGCCGCACGCCGTTTGCGGCTTCGTCCAACGAGACGACGCTAAGGAACATTATAAAGAAGCCGTTGACGTTTCCGACTGCGGTGCCGTCTGGCGCGCTTGAGCACCACGCGCGGGACCTCATATCCGGATTGCTTAACAAGGATCCGACCCGGAGACTTGGGTCGAAACGCGGGTCCGCCGACATCAAGAAGCATCCGTTCTTCAAGGGGCTCAACTTCGCCTTAATTCGGTCGCTCACTCCGCCGGAAATTCCCGGCGTACGACGGCGGAAGCAGACTCCCGTTCCGGCGGCCAAGAGCAAGGACAAGCCGGGTCAGTCAGCCGGGTTCGATTACTTCTGA 1398 52.5 MLEHLARESDGELGYEAAVNSNSSQNSMSSESCSSFSRLSFDAAIDLPTSRSSPESLDLKPHRSSDFAYSAIRRRKSKLTFRDFRLLRRIGAGDIGTVYLCQLRKLSEGCYEEEDDDPCLYAMKVVDKEALELKKKVQRAEMERRILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKQPRKRFSLTSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDATPAVESPNSSPTTAFPDATAYPRTNAAVSAASTTPFSCLYNRLFRSRKVQTLTPNWLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWAFGIFLYELIYGRTPFAASSNETTLRNIIKKPLTFPTAVPSGALEHHARDLISGLLNKDPTRRLGSKRGSADIKKHPFFKGLNFALIRSLTPPEIPGVRRRKQTPVPAAKSKDKPGQSAGFDYF 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7185350 7187342 + CmPI595203_03g012390.1 Cmu03g1239 412025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1239 465 MobiDBLite consensus disorder prediction 436 465 - -
Cmu03g1239 465 FunFam serine/threonine-protein kinase D6PK-like 312 438 - -
Cmu03g1239 465 SMART serkin_6 84 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1239 465 Pfam Protein kinase domain 85 245 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1239 465 Pfam Protein kinase domain 314 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1239 465 SUPERFAMILY Protein kinase-like (PK-like) 63 436 IPR011009 -
Cmu03g1239 465 Gene3D Transferase(Phosphotransferase) domain 1 175 242 - -
Cmu03g1239 465 CDD STKc_phototropin_like 82 443 - -
Cmu03g1239 465 PANTHER FLIPPASE KINASE 1-RELATED 30 443 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cmu03g1239 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1239 465 ProSiteProfiles Protein kinase domain profile. 84 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1239 465 FunFam protein kinase PINOID 175 243 - -
Cmu03g1239 465 Coils Coil 123 150 - -
Cmu03g1239 465 Gene3D Transferase(Phosphotransferase) domain 1 313 438 - -
Cmu03g1239 465 FunFam protein kinase PINOID 2 82 174 - -
Cmu03g1239 465 Gene3D Phosphorylase Kinase; domain 1 82 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1239 Cmu-Chr3:7185350 Cmu11g0276 Cmu-Chr11:3292389 7.70E-108 dispersed
Cmu03g1239 Cmu-Chr3:7185350 Cmu02g2184 Cmu-Chr2:35479174 5.70E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75394 PF00069 Pkinase 1.10E-31 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1239 - - - 0.0