Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1247 ATGAGGCTCTCTGCAGGTGGTTTTAGTCCTCAGGCTCAGGAAGGTGAGAGGAGGGTCCTGAATTCCGAGCTTTGGCATGCGTGCGCTGGTCCTCTTGTTTCTCTGCCGGCTGTTGGCAGTCGCGTTGTTTATTTTCCTCAAGGTCATAGTGAGCAGGTTGCTGCATCTACCAATAAAGAGGTGGATGCCCAGATACCGAATTACCCGAGTTTACCGCCGCAGCTCATTTGTCAGCTTCACAATCTGACAATGCATGCAGATGCTGAGACAGATGAAGTATATGCTCAGATGACTCTGCAACCCTTGAGTGCTCAAGAATTGAAGGAAGCCTACCTTCCAGCCGAGTTGGGAACTCCAAGTAGGCAGCCAACGAATTACTTTTGCAAAACTTTGACGGCCAGTGATACCAGCACACATGGAGGTTTTTCTGTTCCTCGCCGTGCTGCTGAAAAAGTATTCCCTCCTTTGGACTTCTCTATGCAGCCCCCAGCCCAAGAGCTGATTGCGAGGGACCTACACGATAATGAGTGGAAATTTAGACACATATTTCGCGGCCAGCCTAAAAGACACCTTCTAACAACTGGATGGAGTGTCTTCGTGAGTGCTAAAAGACTTGTTGCTGGTGATGCTGTACTTTTTATCTGGAATGAAAAGAATCAATTACTCCTTGGAATTAGGCGTGCAAGTCGACCACAAACCGTGATGCCTTCATCTGTGTTGTCAAGTGATAGCATGCATTTAGGGCTTCTTGCTGCAGCATCTCATGCAGCTGCTACCATCAGTCGGTTTACAATATTTTTTAACCCAAGGGCTAGCCCTTCAGAGTTTGTCATACCTCTGACCAAATATGTGAAGGCAGTCTACCATACACGTGTTTCTGTTGGCATGCGCTTCAGGATGCTGTTTGAGACGGAAGAATCAAGTGTTCGTCGCTACATGGGCACAATCACTGGCATTAGTGACTTGGATCCTGTAAGATGGCAAAACTCCCATTGGCGCTCAGTCAAGGTTGGCTGGGACGAGTCAACAGCAGGAGAACGGCAGCCAAGAGTTTCCTTGTGGGAAATTGAACCACTGACAACATTTCCAATGTATCCATCACCGTTTCCACTTAGGCTGAAGCGACCATGGCCAACTGGTTTGCCTTCTTTCGGCATCAAGGATAGTGACCTCGGAATGAATTCTCCATTCATGTGGCTACGGGGAGATAATAGTGATCGTGGCATCCAGTGTCTAAACTTTCAGGGAACTGGGGTCTCACCATGGATGCAGCCAAGGCTTGATCCATCCATGATGGGTATGCAGTCTGACATGTATCAAGCCATGGCTACTGCAGCTCTTCAGGAGATGAGGGCAATTGATTATTCCAAAATAGCACCTGCATCCGTTCTGCAATTCCAGCAGCCCCAAGGTCTTCCTTGTCAGTCTTCTACCTTAATGCAGCCTCAGATGTTGCATCAGTCTCAACCTCAGCAAGCGTTTCTACAATCCGTTCAAGAAAACCAGCAGCATTCTCAGTCTCAGTCTCAGGCTCAAACTCAGTCGCATCATCTTCAGCCACAATTGCAGCCCCAACAATTGTTCAATAATCAACAACAGCAGCATCAACAGCAACCAAGGCAGGCACAGCCACTCGATCATCAGCAGATTCCTTGTACAATCCCTGCTATATCTCAGTTTGCTTCATGTTCTCAATCTCAGTCACCGTCCCTGCAAACCGTCCCTTCCCTTTGCCAACAACCAGGTTTTTCTGATTCCAACTGTAACCCTGTAACTAGTCCTACTGTTTCCCCATTGCATAGCCTTGCGGGTTCATTTGTCCAAGATGACTCGGCCCAGCTGCTTAACCTTCAAAGAGCACATTCGGTAATTCCTTCAGCTGGTTGGCCATCAAAGAGAGCTGCTATTGATCCTCTCTGTACTGGAGCTGCTCAATATTTTCTACCTCAAGTGGAAATTTTGGGAACACCACAGAGTAGTATTTCTCAGAATACTGTTGCATTGCCACCTTTCCCCGGAAGGGAGTGTCCTATTGATGACCGAGATGAGGGTTCTGATCCACAAAACCATGTTTTATTTGGTGTGAATATAGAATCTTCATCCCTTCTCATGCAGAATGGGATGTCAAACCTTAGGGGAGTCGGCAATGATAGTGTTTCTACAACTCTACCTTTTTCTTCCAATTATATGAGCACTGCTGGAACCAATTTTTCTGTAAATCCAACCATGACATCCTCAAATTGCATCGACGAATCGGGTTTCCTGCAGTCTCATGAAAATGTGGGCCAAGTAAACCCACCCAACGGAACCTTTGTCAAGGTTCATAAATCGGGGACCTACAGTAGGTCGTTAGATATAACCAAATTCAACAGCTATCCTGAGCTACGCAGCGAGCTTGCTCGCATGTTTGGCCTAGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGACGTTCTTCTCCTTGGCGATGGCCCATGGCCGGAGTTTGTAAACAGTGTGTGGTGTATCAAAATACTTTCACCAGAAGAAGTTCAGGACATGGGCAAACGAGGTTTAGAACTTCTGAACTCTGTGCCAATTCAGAGGCTCTCGAACAGCACCTGTGACGACTATGGTAGCCGACAGGACTCGAGAAATTTGATTTCAGGGATAACCTCTGTCGGGGCTCTTGACTACTGA 2709 47.29 MRLSAGGFSPQAQEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAQIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLSAQELKEAYLPAELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAASHAAATISRFTIFFNPRASPSEFVIPLTKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFGIKDSDLGMNSPFMWLRGDNSDRGIQCLNFQGTGVSPWMQPRLDPSMMGMQSDMYQAMATAALQEMRAIDYSKIAPASVLQFQQPQGLPCQSSTLMQPQMLHQSQPQQAFLQSVQENQQHSQSQSQAQTQSHHLQPQLQPQQLFNNQQQQHQQQPRQAQPLDHQQIPCTIPAISQFASCSQSQSPSLQTVPSLCQQPGFSDSNCNPVTSPTVSPLHSLAGSFVQDDSAQLLNLQRAHSVIPSAGWPSKRAAIDPLCTGAAQYFLPQVEILGTPQSSISQNTVALPPFPGRECPIDDRDEGSDPQNHVLFGVNIESSSLLMQNGMSNLRGVGNDSVSTTLPFSSNYMSTAGTNFSVNPTMTSSNCIDESGFLQSHENVGQVNPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQDMGKRGLELLNSVPIQRLSNSTCDDYGSRQDSRNLISGITSVGALDY 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7328950 7334333 + CmPI595203_03g012470.1 Cmu03g1247 412033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1247 902 ProSiteProfiles PB1 domain profile. 769 853 IPR053793 -
Cmu03g1247 902 Pfam Auxin response factor 253 335 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu03g1247 902 Gene3D - 291 363 - -
Cmu03g1247 902 FunFam Auxin response factor 291 363 - -
Cmu03g1247 902 FunFam Auxin response factor 765 858 - -
Cmu03g1247 902 CDD B3_DNA 126 227 IPR003340 GO:0003677(InterPro)
Cmu03g1247 902 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677(InterPro)
Cmu03g1247 902 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677(InterPro)
Cmu03g1247 902 SUPERFAMILY CAD & PB1 domains 759 844 - -
Cmu03g1247 902 Gene3D - 767 858 - -
Cmu03g1247 902 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Cmu03g1247 902 Gene3D - 125 228 IPR015300 -
Cmu03g1247 902 Pfam AUX/IAA family 763 858 IPR033389 -
Cmu03g1247 902 SMART B3_2 127 229 IPR003340 GO:0003677(InterPro)
Cmu03g1247 902 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 860 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu03g1247 902 FunFam Auxin response factor 125 229 - -
Cmu03g1247 902 MobiDBLite consensus disorder prediction 483 520 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0800 Cmu-Chr1:9109490 Cmu03g1247 Cmu-Chr3:7328950 9.30E-163 dispersed
Cmu01g0803 Cmu-Chr1:9130476 Cmu03g1247 Cmu-Chr3:7328950 1.60E-89 dispersed
Cmu03g1247 Cmu-Chr3:7328950 Cmu05g1895 Cmu-Chr5:28896013 2.80E-170 dispersed
Cmu01g2432 Cmu-Chr1:36248281 Cmu03g1247 Cmu-Chr3:7328950 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5898 PF02309 AUX_IAA 3.20E-07 CL0072 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1247 K14486 - csv:101211705 1655.96