Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1300 ATGCGATGTTCTTACTGTACAAAGCACTTCTTCCAGCGGTTTTTCACGGATGAGTTCCAAATCAACGGCGGCGGAGGCAGCGGCGGCGCTCTTCAAAGCACTTTTTTGTCTCCTGAGCTTTTGCCTTCTCTTGGAGCCAGTATTAACCAAACCACCACCCTTCGTAAACACATCATTTCCCCTTTTGACCCTCGTTATCGAGCATGGGAGATGTGGCTAGTGGTTCTAGTGATATACTCAGCTTGGATTTGTCCATTCGAATTTGCATTTCTTCCTTACAAGCAAAATGCTCTTTTCATCATAGATCACTTTGTGAATGCCTTCTTTGCCATCGATATCATTTTAACTTTCTTCGTCGCATATCTCGACTCCCAATCCTATCTTCTCATCGATCACCCCAAAAAGATTGCACTAAGGTATTTATCTACTTGGTTTATATTCGACGTTTGTTCTACCGCGCCATTACAATCAATCAGTTTCTTGTTCACAAATCAAAGTGGAGAAGTTGGGTTTAAGCTTCTCAATATGCTCCGGCTATGGCGGCTCCGACGGGTCAGCTCTCTCTTTGCAAGGCTAGAAAAGGACATCAGGTTCAATTATTTCTGGACTCGTTGCACAAAGCTCATTTCTGTTACATTATTTGCAGTACATTGTGCTGGGTGCTTCAATTATGTAATAGCAGATAAATATCCAGACTCAAAACAAACATGGATTGGTGCAGTTAACCCAAATTTCAAAGAAGATAGTGTATGGAACCTTTATATTACTTCACTTTATTGGTCCATTACCACCTTAACAACCACTGGCTATGGCGATCTCCATGCTGAAAACCCTAGAGAAATGCTGTTTGATATCTTTTATATGCTCTTCAATTTGGGCTTCACTTCCTATCTCATCGGTAACATGACTAATCTCGTCGTCCACTGGACCAGTCGCACTCGAAACTTCAGAGATTCGGTGCAAGCTGCGACGGAGTTCGCATTGAGAAACCAGTTACCGGAACGGATACAAGACCAGATGTTGTCACACATATGTCTCAAGTTCAGAACTGAGGGGTTGAAGCAACAAGACACATTGAATGACCTTCCAAAAGCCATTAGAGCCTCCATAGCTCACTATCTCTTCTATCCTATTCTTCAAAAGGCCTACCTTTTTGAAGGAGTTTCTCATGACTTTCTTTTCCAATTGGTCTCAGATGTGGAGGCTGAGTACTTCCCACCCAAAGAAGACATTATACTTCAAAATGAGGCACAAACAGATCTCTATATATTAGTCTCAGGCAGTGTGGATCTAATATTATCCAATAATGAAGATGGGCAGGATGAGCAAGTTATAGGAGGAGCAACAGCTGGAGAAATGTTTGGAGAATTTGGAGTTTTATGTCAAAAGCCACAGCCTTTCACAGTTAGAACCACAAAGCTTTCTCAAATATTAAGGCTCAAGAGAACTTCTTTGTTGTATATTCTTCAATCAAACACAGAAGATGGGAATATTATAATGAACAACTTTTTCATGAAAATGAAGGAATATGAAAGAATTATGGGGAATATTTGGTGTGATAATGGTGAGCTATTAAAGAAAGTTGAAAATTATTCTAAAGAGGATGATGAAAATTATGTGGGAAGTAATAATAATAATTTAGATGAACATAGAATTGAGTTTGATGAAGAGGTTGAAGGGGGTGAAAAGGAAATTATTAAATTTTCTCATAACAACAAATTACAAGGAAGAAATAATGGAGGTCAACCTTCATTAGAAAATTTCCCAACAGTTAGCTCTAATTACTTGAATAATGTCTCTAGACAAATCAAGAAAAGGGTTACTGTATATATGCAGCATCCTCAAGATAGAAGCAAGGTTAAAAGTCAATATGGGAAGTTGATGCTTCTCCCCAATTCCATCGAAGAGCTTTGCAAAATTGCTGGTGAAAAGTTTGGAGGGCAAATGCCAACAAAAGTGATGAGTGCGGATAATGCAGAAATTGATGATATAAATGTGATTCGTGATGGTGACCATTTGTTTCTTCTTTATAGTGATATTGAAAATTGTGGTCTTCAATGA 2061 38.96 MRCSYCTKHFFQRFFTDEFQINGGGGSGGALQSTFLSPELLPSLGASINQTTTLRKHIISPFDPRYRAWEMWLVVLVIYSAWICPFEFAFLPYKQNALFIIDHFVNAFFAIDIILTFFVAYLDSQSYLLIDHPKKIALRYLSTWFIFDVCSTAPLQSISFLFTNQSGEVGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLISVTLFAVHCAGCFNYVIADKYPDSKQTWIGAVNPNFKEDSVWNLYITSLYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGFTSYLIGNMTNLVVHWTSRTRNFRDSVQAATEFALRNQLPERIQDQMLSHICLKFRTEGLKQQDTLNDLPKAIRASIAHYLFYPILQKAYLFEGVSHDFLFQLVSDVEAEYFPPKEDIILQNEAQTDLYILVSGSVDLILSNNEDGQDEQVIGGATAGEMFGEFGVLCQKPQPFTVRTTKLSQILRLKRTSLLYILQSNTEDGNIIMNNFFMKMKEYERIMGNIWCDNGELLKKVENYSKEDDENYVGSNNNNLDEHRIEFDEEVEGGEKEIIKFSHNNKLQGRNNGGQPSLENFPTVSSNYLNNVSRQIKKRVTVYMQHPQDRSKVKSQYGKLMLLPNSIEELCKIAGEKFGGQMPTKVMSADNAEIDDINVIRDGDHLFLLYSDIENCGLQ 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8080645 8087533 - CmPI595203_03g013000.1 Cmu03g1300 412086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1300 686 Gene3D Jelly Rolls 351 516 IPR014710 -
Cmu03g1300 686 Pfam Ion transport protein 66 313 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu03g1300 686 PRINTS EAG/ELK/ERG potassium channel family signature 254 271 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu03g1300 686 PRINTS EAG/ELK/ERG potassium channel family signature 298 307 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu03g1300 686 PRINTS EAG/ELK/ERG potassium channel family signature 280 291 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu03g1300 686 PRINTS EAG/ELK/ERG potassium channel family signature 102 112 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu03g1300 686 PRINTS EAG/ELK/ERG potassium channel family signature 79 86 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu03g1300 686 PRINTS EAG/ELK/ERG potassium channel family signature 113 122 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu03g1300 686 ProSiteProfiles KHA domain profile. 606 686 IPR021789 -
Cmu03g1300 686 ProSiteProfiles cAMP/cGMP binding motif profile. 384 506 IPR000595 -
Cmu03g1300 686 SUPERFAMILY Voltage-gated potassium channels 61 307 - -
Cmu03g1300 686 CDD CAP_ED 384 500 IPR000595 -
Cmu03g1300 686 FunFam Potassium channel KAT3 68 308 - -
Cmu03g1300 686 Gene3D - 67 307 - -
Cmu03g1300 686 SMART cnmp_10 384 504 IPR000595 -
Cmu03g1300 686 Pfam Cyclic nucleotide-binding domain 403 492 IPR000595 -
Cmu03g1300 686 FunFam Potassium channel KAT2 372 511 - -
Cmu03g1300 686 SUPERFAMILY cAMP-binding domain-like 311 503 IPR018490 -
Cmu03g1300 686 Pfam KHA, dimerisation domain of potassium ion channel 605 675 IPR021789 -
Cmu03g1300 686 PANTHER POTASSIUM CHANNEL AKT1 17 540 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1300 Cmu-Chr3:8080645 Cmu06g1123 Cmu-Chr6:21900876 5.10E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1300 K21867 - csv:101215858 1179.47