Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1325 ATGGAAACGAATAACAGTAACAACGGGGTGAGGTTTTTGTTGGGGAAGCAATCGTCGATGGCGCCGGACCGGAAATCGGAGGAGGTGGCGGAGGCGGAGGCGGAGGCGGGGGAAGACGGGGAGGAGATCGATCCAGGGGTGAGATTGATGTATTTGGCGAATGAAGGCGATTTAGAAGGGATTAAGGAGCTTCTAGATTCTGGAATTGATGTCAATTTTCACGATGTTGATAATCGGACGGCGCTTCATGTTGCTGCTTGTCAAGGCTGCTCCAAGATCGTCGATTTATTGCTCCACCGTGGCGCTGAGATTGACCCTAAAGATCGCTGGGGTAGTACGCCTCTTGCAGATGCTATATTCTACAAAAATCATGAAGTTATCAAATTGCTGGAAAAAAGAGGCGCAAAACATCTGATGGCTCCCATGCTTGTCAAGCATGCTCGTGAAGTCCCAGAATATGAAATTGATCCTAAAGAATTTGACTTCACAAACAGTGTCAACTTGACCAAGGGTACCTTCCATCTTGCATCATGGCGCGGAATCCAAGTTGCAGTCAAAGAGCTTCCCGAGGATGTGATTTCAGAGGAGGATAAAGTGAACGCCTTTAGAGATGAGCTTGCATTGCTTCAGAAGATTCGGCATCCTAATGTCGTTCAATTTCTTGGTGCTGTCACTCAAAGTAGTCCCATGATGATTGTTACTGAATATTTGCCTAAGGGAGATCTTTGTCAACTGTTACAGAGAAAAGGAGCATTAAAACCAATTGTAGCTGTGAAATTTGCCCTTGATATTGCAAGGGGAATGAACTATTTACACGAAAATAAACCTGCCCCGATCATCCACCGTGATCTCGAGCCATCAAATATATTGCGAGATGACACTGGGAACCTGAAAGTTGCAGACTTTGGAGTTAGCAAATTGCTCACAGTCAAGGAGGATAAACCTCTAATTTGTCAAGACACTGCTTGCCGATATGTCGCTCCAGAAGTTTTCAAAAACAATGGATACGATACCAAAGTAGATGTCTTCTCCTTTGCTTTAATTCTACAAGAGATGATCGAAGGGCAACCACCGTTTTCAAACAAAAAAGAAAATGCCATTCTTAAAGAGTATGCAGCCGGAGTACGCCCTCCTTTCAAAGCTCCAGCTAAATGCTACGCCCATGGAATTAAAGAGTTGATTGAAGATTGCTGGGATGAGAAGCCATCAAAGAGACCAACTTTTAGGCAGATAATCACGAGGCTGGAAACAATTCATCACAGTCTTAGCCATAGAAGGCGTTGGAAGCTCCCAACAATGAGATGTTTTCAGGATCCAGAAGCTAAGATAAGAAGAGACCATCTCTCAAGCAGCCGGAGCCTTTCATCACGATCTGCAAGCAGCATATGA 1389 44.71 METNNSNNGVRFLLGKQSSMAPDRKSEEVAEAEAEAGEDGEEIDPGVRLMYLANEGDLEGIKELLDSGIDVNFHDVDNRTALHVAACQGCSKIVDLLLHRGAEIDPKDRWGSTPLADAIFYKNHEVIKLLEKRGAKHLMAPMLVKHAREVPEYEIDPKEFDFTNSVNLTKGTFHLASWRGIQVAVKELPEDVISEEDKVNAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLCQLLQRKGALKPIVAVKFALDIARGMNYLHENKPAPIIHRDLEPSNILRDDTGNLKVADFGVSKLLTVKEDKPLICQDTACRYVAPEVFKNNGYDTKVDVFSFALILQEMIEGQPPFSNKKENAILKEYAAGVRPPFKAPAKCYAHGIKELIEDCWDEKPSKRPTFRQIITRLETIHHSLSHRRRWKLPTMRCFQDPEAKIRRDHLSSSRSLSSRSASSI 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8388262 8393285 - CmPI595203_03g013250.1 Cmu03g1325 412111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1325 462 FunFam Os01g0748600 protein 148 435 - -
Cmu03g1325 462 ProSiteProfiles Ankyrin repeat profile. 77 109 IPR002110 GO:0005515(InterPro)
Cmu03g1325 462 PIRSF ILK 1 437 - -
Cmu03g1325 462 Pfam Ankyrin repeats (3 copies) 49 136 IPR002110 GO:0005515(InterPro)
Cmu03g1325 462 SUPERFAMILY Protein kinase-like (PK-like) 171 418 IPR011009 -
Cmu03g1325 462 SUPERFAMILY Ankyrin repeat 48 137 IPR036770 -
Cmu03g1325 462 ProSiteProfiles Protein kinase domain profile. 127 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1325 462 Gene3D Phosphorylase Kinase; domain 1 161 237 - -
Cmu03g1325 462 Pfam Protein tyrosine and serine/threonine kinase 174 415 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1325 462 CDD STKc_MAP3K-like 171 415 - -
Cmu03g1325 462 ProSiteProfiles Ankyrin repeat region circular profile. 77 109 - -
Cmu03g1325 462 FunFam Integrin-linked protein kinase family 26 153 - -
Cmu03g1325 462 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 78 416 IPR051681 GO:0004674(PANTHER)
Cmu03g1325 462 MobiDBLite consensus disorder prediction 1 40 - -
Cmu03g1325 462 SMART ANK_2a 44 73 IPR002110 GO:0005515(InterPro)
Cmu03g1325 462 SMART ANK_2a 77 106 IPR002110 GO:0005515(InterPro)
Cmu03g1325 462 SMART ANK_2a 110 139 IPR002110 GO:0005515(InterPro)
Cmu03g1325 462 Gene3D Transferase(Phosphotransferase) domain 1 238 453 - -
Cmu03g1325 462 FunFam serine/threonine-protein kinase STY46-like 155 238 - -
Cmu03g1325 462 Gene3D - 15 150 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1325 Cmu-Chr3:8388262 Cmu05g1580 Cmu-Chr5:25295748 7.30E-42 dispersed
Cmu05g2454 Cmu-Chr5:33565435 Cmu03g1325 Cmu-Chr3:8388262 4.60E-81 transposed
Cmu09g1359 Cmu-Chr9:20537076 Cmu03g1325 Cmu-Chr3:8388262 3.80E-86 transposed
Cmu01g2351 Cmu-Chr1:35587893 Cmu03g1325 Cmu-Chr3:8388262 7.60E-144 wgd
Cmu02g1823 Cmu-Chr2:32134094 Cmu03g1325 Cmu-Chr3:8388262 2.00E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75396 PF07714 PK_Tyr_Ser-Thr 3.00E-55 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1325 - - - 0.0