Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1329 ATGATGGTGGCCAAGAGCTTCTTCGTTTTCATTGTTCTTGTGGTGGATTGCTTCATGTTCTTCAGATTTGCAGATTCCAAGGTTCCCCAAGAAGAGGTTGATGTACTACAGCAAATTACGAGAACATTAGGTGCAGTTTATTGGAAATTCAATAGTGACTCTTGTGCCGTTGAAATGTTTGGGGTGACAGAAAAATCTCCCAGGGGATCTGAGACTATAATTGGTTGTGATTGCAACATCGAGAACAGTACACTTTGTCACGTCGTAAGGATAGAATTCAAAAATCACAATCTGCCCGGTGTTCTTCCACCTGAAATAGTCAAACTTCCTCACCTGCAAGTAGTTGATTTTGCTTACAACTACCTTCATGGTAATATACCTCAGGAATGGGCTTCAATGCGGCTGACATCAATCTCTCTTCTTGTAAATCGGTTATCAGGGGAAATACCAGCAGAATTGGGGAATATTACTACTCTAACATTACTGAACCTTGAAGCAAACCAATTTACTGGTGCAATACCATCACAACTCGGGAGGTTAAGCAACCTGCAAGACTTGTTGCTATCATCTAATCAATTGACTGGCACATTACCGACAACATTTGCTGGTTTGAAAAACCTAACAAATTTCCGGATAAATGATAACAACCTAAATGGATCCATACCTGAGTTCATACAGAATTGGATACTACTCAACAGATTAGAACTACATGCAAGTGGACTTCAGGGACCAATTCCTGCAAAAATATCCCTTTTGAGGAACTTAAAAGAATTAAGGATCAGTGATATTAACGGGCCAAAGCAGGATTTTCCTGAGTTGAGAAACATGACGGGCATGGTTAGATTGGTTCTGAGAAATTGTAACATTGCTGGAAAGATTCCTTCATATGTGTGGATGTTACCAGACATGGAAATGCTGGACGTCAGCTTTAACCATATAACAGGGGAAATTCCAGAGGATATAAACATGGAGCGCATTAGATTTCTCTTCTTAAGTGGCAATATGCTGAGTGGCGACCTACCAGAGTCAATCTTGAAGGATGGAACTAATGTCGATCTTTCATACAATAACTTGACATGGCAAGGCCCTGAGCAGCATGCTTGTAGAAAGAATTTGAATATGAATCTGAACTTGTTTCGAAGTTCCTCCACCGGCAACACCTTACAAGAAAGTCTCCCCTGCTTAAAGGATTCCATCTGTTCAAAATATTCAAAATGTTGGTTTGTTAATTCTGGTGGGAATGACTTAACTATGGAGGTTAACAACAGAAATGTTCTCTACAACGGGGATGCAGATGTTGAAGGTGGAACAGCAAAATTCTACATTGATCATGATAGCCACTGGGGATTGAGTAGTACTGGAGATTTCATGGATGATTTTGATTACCAAAATACACGCTACACTTTATCCTTGCCTTCATCAAATTTGTCCGAGCTATATTCAACAGCACGTCGAAGTCCAATTACGCTCACTTATTTCCATCATTGCTTGGATAATGGAAACTACTCAGTCAAGCTTCATTTTGCTGAGTTACAATTCACAGATGATAGGACATATACAAGTCTTGGAAGGCGGAAATTTGATATCTACATTCAGGATAGGTTGGTATTGGAGAATTTTGATATTGAAGAGAAGGCAGGAGGAACTCAAAAACCAGCCGAATTGCAGTTTAATAACATTAGTGTAATTAATCATGTTCTGGAGATCCGATTCTATTGGGCTGGAAAAGGGACAACTAGAATTCCTGATAGAGGAGTTTATGGTCCACTTATATCAGCTATTTCTGTTTATTCTGATCTTAAATATTGTTCAATCCGCGAAAGTGGTAAAAAGAAAATTGTAGCAATTGCTGTTGGCATTGCGGTTGGATTATTATGCCTTGCTACAGTCATTATAGTGGGACTTCTTTGGTGGAAAGGCACTCTTAGAGCAATCAGGCGGAGTAAAGGTGGTACAGATCTTGCAGGAATAGAAGTGCAAACTGGAATTTTTACGTTGAAACAAATAAAAGCTGCCACCAATCATTTTGATTCTTGTAATAAGATTGGAGAAGGTGGCTTTGGCCCCGTTTATAAGGGTCAATTGGTTGATGGTACTATTGTAGCAATCAAGCAACTCTCGTCCAAATCAAAGCAGGGAAATCGTGAATTTCTCAATGAGATAGGAATGATCTCTTGTTTGCAACACCCGAATCTAGTCAAGCTCCATGGATGCTGTATTGAAGGGGATCAATTGTTGTTGGTGTATGAATATTTGGAAAACAATAGTCTTGCCCGAGCACTATTTGGTCCAGATTATAGTCGGCTTAATCTAGATTGGCCAACCAGGCTTAGAATCTGTATCGGTATAGCGAAAGGCTTAGCATATCTCCATGAGGAATCAAGCCTCAAAATCGTTCACAGAGACATCAAAGCTACTAATGTGCTACTGGATGGCGAATTGAATCCTAAAATATCTGATTTTGGTTTGGCTAAGCTTGACGATGAGGAGAAGACTCATATCACCACTAGAGTGGCCGGGACTATAGGATATATGGCTCCGGAATATGCACTTTGGGGTTATCTGACCTACAAAGCAGATGTGTATAGTTTTGGAGTTGTGGCCTTGGAAATTGTAAGTGGAAGAAGCAACAATGATTATGTACCAAGTGAAACTTGTGTTTGCCTTCTAGACTGGGCCTGTCACTTGCAACAATCTGGGAACCTTATGGAGTTGGTAGATGAGAAGTTGAAACCAGAAATCGACAGGAAAGAAGCGGAAAATATGGTGAAAATAGCCCTTCTCTGCACCAATGCTTCACCATCAGTAAGGCCTGTGATGTCGGAAGTGGTGAACATGCTCGAAGGACGAATGGCGATTCCAGACCTGATCCCGGAACCGAGTAGTTATAATGAAGATCTGAGGTTCAAGGCAATGAGAGATATGCGTAAACAGCAACAGAGCCAAAGCCTGAGTGAAAGCCAAACCCAAAATTCCACAATGCAAACATTTGAGTCTTCCACTACATCTGGAAATGAGTTCTATGACATCAACCCAGAGCCAAGATCATCAACAACCTGA 3060 40.59 MMVAKSFFVFIVLVVDCFMFFRFADSKVPQEEVDVLQQITRTLGAVYWKFNSDSCAVEMFGVTEKSPRGSETIIGCDCNIENSTLCHVVRIEFKNHNLPGVLPPEIVKLPHLQVVDFAYNYLHGNIPQEWASMRLTSISLLVNRLSGEIPAELGNITTLTLLNLEANQFTGAIPSQLGRLSNLQDLLLSSNQLTGTLPTTFAGLKNLTNFRINDNNLNGSIPEFIQNWILLNRLELHASGLQGPIPAKISLLRNLKELRISDINGPKQDFPELRNMTGMVRLVLRNCNIAGKIPSYVWMLPDMEMLDVSFNHITGEIPEDINMERIRFLFLSGNMLSGDLPESILKDGTNVDLSYNNLTWQGPEQHACRKNLNMNLNLFRSSSTGNTLQESLPCLKDSICSKYSKCWFVNSGGNDLTMEVNNRNVLYNGDADVEGGTAKFYIDHDSHWGLSSTGDFMDDFDYQNTRYTLSLPSSNLSELYSTARRSPITLTYFHHCLDNGNYSVKLHFAELQFTDDRTYTSLGRRKFDIYIQDRLVLENFDIEEKAGGTQKPAELQFNNISVINHVLEIRFYWAGKGTTRIPDRGVYGPLISAISVYSDLKYCSIRESGKKKIVAIAVGIAVGLLCLATVIIVGLLWWKGTLRAIRRSKGGTDLAGIEVQTGIFTLKQIKAATNHFDSCNKIGEGGFGPVYKGQLVDGTIVAIKQLSSKSKQGNREFLNEIGMISCLQHPNLVKLHGCCIEGDQLLLVYEYLENNSLARALFGPDYSRLNLDWPTRLRICIGIAKGLAYLHEESSLKIVHRDIKATNVLLDGELNPKISDFGLAKLDDEEKTHITTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGRSNNDYVPSETCVCLLDWACHLQQSGNLMELVDEKLKPEIDRKEAENMVKIALLCTNASPSVRPVMSEVVNMLEGRMAIPDLIPEPSSYNEDLRFKAMRDMRKQQQSQSLSESQTQNSTMQTFESSTTSGNEFYDINPEPRSSTT 1019
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8410969 8423948 - CmPI595203_03g013290.1 Cmu03g1329 412115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1329 1019 Gene3D Ribonuclease Inhibitor 198 265 IPR032675 -
Cmu03g1329 1019 Gene3D Ribonuclease Inhibitor 46 197 IPR032675 -
Cmu03g1329 1019 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 973 IPR051824 -
Cmu03g1329 1019 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 266 387 - -
Cmu03g1329 1019 Gene3D Phosphorylase Kinase; domain 1 641 751 - -
Cmu03g1329 1019 Gene3D - 405 600 - -
Cmu03g1329 1019 SUPERFAMILY L domain-like 76 318 - -
Cmu03g1329 1019 Pfam Leucine rich repeat 158 217 IPR001611 GO:0005515(InterPro)
Cmu03g1329 1019 Gene3D Transferase(Phosphotransferase) domain 1 752 954 - -
Cmu03g1329 1019 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 264 - -
Cmu03g1329 1019 CDD STKc_IRAK 682 949 - -
Cmu03g1329 1019 MobiDBLite consensus disorder prediction 973 1019 - -
Cmu03g1329 1019 SUPERFAMILY Protein kinase-like (PK-like) 659 949 IPR011009 -
Cmu03g1329 1019 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 646 751 - -
Cmu03g1329 1019 Pfam Malectin domain 406 594 IPR021720 -
Cmu03g1329 1019 MobiDBLite consensus disorder prediction 976 1019 - -
Cmu03g1329 1019 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 197 - -
Cmu03g1329 1019 SMART serkin_6 676 928 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1329 1019 FunFam Putative LRR receptor-like serine/threonine-protein kinase 752 958 - -
Cmu03g1329 1019 Gene3D Ribonuclease Inhibitor 266 392 IPR032675 -
Cmu03g1329 1019 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 599 - -
Cmu03g1329 1019 Pfam Protein tyrosine and serine/threonine kinase 680 947 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1329 1019 ProSiteProfiles Protein kinase domain profile. 676 953 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1329 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1329 Cmu-Chr3:8410969 Cmu11g1727 Cmu-Chr11:29398884 5.60E-204 dispersed
Cmu03g1329 Cmu-Chr3:8410969 Cmu11g1728 Cmu-Chr11:29414431 1.00E-200 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75397 PF07714 PK_Tyr_Ser-Thr 4.20E-48 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1329 - - - 0.0