Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1335 ATGGATGAAGCTCAGGGAGGTGGCTTGACTTCGCTGCCTCCATTTTTAGTCAAAACGTATGATATGGTTGATGACCCTTCAACCAATTCGATTGTTTCATGGAGTTCTAGTGATAAAAGCTTTGTTGTTTGGAATCCACTGGATTTCTCATCAGTTTTGTTGCCTAAATTCTTTAAGCATAGCAACTTCTCGAGCTTCATCAGGCAGCTCAATACTTATGGGTTCAGAAAGGTGGATCCCGAACAATGGGAATTTGCCAATGAGGATTTTGTTAGAGGTAAGCCACACCTGATGAAGAACATCCACAGGAGGAAACCAGTTCATTGTCATTCTTCACAGAACCTTCATGGACAAGGAATATCTCCTCCACTAACTGAAGTGGAAAGAAATAGTTTAAAGGATGACATCGAAAGGCTGAAACTGGACAAAGAGCAGCTTCTTCTCGAGTTGCGAGAACACGAACAAGAGTATCAAGGAGTTGGATTGCAAATGCAGAATTTGAAAGATAGATTTCAACGTGTGCAACAAGAGATGCAATTATTTATCGGTCTGATGGCTCGCCTTTTGCAGAAACCGGGACTTCGCTTGGATCTCCTGCCACAATTGGAAACTCCTGAGAGAAAGAGGAGATTACCTAGAGTTTCTTACAACAAAAGTGAAGACAACCTTGAAGATAATCAGATGGGGACAACTCAAACAATCGGTAGAGAAGATATGGGTTGTAGTTTTGATCCAATTTTGAAAAAAGAGCAGTTTGAACTTGTTGAGACATCTCTGACCTTTTGGGAAGGCATTATCCACAGTTATGGCCAAGCAGTTAGTCCACTTGATTCAAGCTCAAACCTGGAGTTGGGTGGATCTGTAAGTCTTGCCAGTAGCCCTGCTATATCTTGCAGACAAGTTAGTGAGGATTTTCGGTGTAAATCACCTGGAATTGACATGAATTTGGAGCCAATGGCAACCGCTGATCCTAACTCTGTAGCCTCAAAAGATCAAGAAGCTGGAGTCAATGCTCCAGCACCAACTGGAGTTAATGATGTTTTCTGGCAGCAATTCTTGACAGAGAATCCTGGTGCATCTGACCCACAAGAAGTTCAATCGGCCAGAAAAGATTCAGATGTCATAAACGAAGAAAACAAACAGAGTGATCAGGGAAAATTTTGGTGGAACGCAAGGAGTGTAAATAATGTTGTAGAACAGATAGGGCACCTTAAACCAGCTGAGAAATTTTGA 1233 41.93 MDEAQGGGLTSLPPFLVKTYDMVDDPSTNSIVSWSSSDKSFVVWNPLDFSSVLLPKFFKHSNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGKPHLMKNIHRRKPVHCHSSQNLHGQGISPPLTEVERNSLKDDIERLKLDKEQLLLELREHEQEYQGVGLQMQNLKDRFQRVQQEMQLFIGLMARLLQKPGLRLDLLPQLETPERKRRLPRVSYNKSEDNLEDNQMGTTQTIGREDMGCSFDPILKKEQFELVETSLTFWEGIIHSYGQAVSPLDSSSNLELGGSVSLASSPAISCRQVSEDFRCKSPGIDMNLEPMATADPNSVASKDQEAGVNAPAPTGVNDVFWQQFLTENPGASDPQEVQSARKDSDVINEENKQSDQGKFWWNARSVNNVVEQIGHLKPAEKF 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8461212 8462552 + CmPI595203_03g013350.1 Cmu03g1335 412121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1335 410 FunFam Heat shock transcription factor 1 8 105 - -
Cmu03g1335 410 Gene3D - 9 105 IPR036388 -
Cmu03g1335 410 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g1335 410 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g1335 410 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g1335 410 Coils Coil 129 170 - -
Cmu03g1335 410 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g1335 410 SMART hsfneu3 11 104 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g1335 410 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 382 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Cmu03g1335 410 MobiDBLite consensus disorder prediction 366 380 - -
Cmu03g1335 410 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g1335 410 MobiDBLite consensus disorder prediction 356 382 - -
Cmu03g1335 410 SUPERFAMILY Winged helix DNA-binding domain 11 104 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1335 K09419 - - csv:101204390 746.503
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1335 Cmu-Chr3:8461212 Cmu10g0989 Cmu-Chr10:1870895 3.20E-49 dispersed
Cmu05g0334 Cmu-Chr5:2832460 Cmu03g1335 Cmu-Chr3:8461212 1.20E-52 transposed
Cmu01g2342 Cmu-Chr1:35542248 Cmu03g1335 Cmu-Chr3:8461212 9.40E-102 wgd
Cmu02g1814 Cmu-Chr2:32047041 Cmu03g1335 Cmu-Chr3:8461212 1.60E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g260 Blo01g00868 Blo11g00264 . . . . Bma14g00978 Bma01g01469 Cmo13g00611 . . Cma07g00159 . Car07g00139 . . . . . . . . . . Cla01g02342 Cam01g2455 Cec04g2104 Cco04g2180 Clacu01g2475 Cmu01g2342 Cre04g2010 . Cone5ag1639 . . Lsi01g00219 Csa06g03726 Chy12g00055 Cme08g00202 . . . Bda07g00962 . . . . Sed08g2732 . Cmo07g00157 Cma13g00581 . Car13g00464 . Cpe19g01087 Cpe20g00480 Bhi08g02149 Tan05g2532 Cmetu12g1147 Lac10g0985 Hepe07g1835 . . Cla03g00695 Cam03g0699 Cec03g0671 Cco03g0708 Clacu03g0743 Cmu03g1335 Cre03g0980 Lsi02g00833 Csa01g02297 Chy02g00208 Cme12g01263
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g0528 . 37 237 HSF AT4G17750 59.6 1.8e-62 237.3
Cmu09g0703 . 57 298 HSF AT4G17750 51.0 1.9e-59 227.3
Cmu08g1644 . 42 242 HSF AT4G17750 54.6 6.0e-58 222.2
Cmu01g0289 . 41 163 HSF AT4G17750 61.8 3.6e-39 159.8
Cmu08g1539 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cmu05g2061 . 20 118 HSF AT4G17750 69.7 2.4e-38 157.1
Cmu05g0528 . 38 242 HSF AT5G16820 57.0 4.7e-60 229.2
Cmu07g0113 . 41 262 HSF AT5G16820 51.7 3.1e-59 226.5
Cmu09g0703 . 58 270 HSF AT5G16820 54.0 5.4e-56 215.7
Cmu08g1644 . 43 253 HSF AT5G16820 51.1 4.6e-55 212.6
Cmu01g2342 . 9 191 HSF AT5G16820 50.3 5.3e-43 172.6
Cmu06g0879 . 10 176 HSF AT5G16820 51.6 5.8e-42 169.1
Cmu10g0989 . 24 515 HSF AT1G32330 54.0 1.1e-120 430.6
Cmu05g0528 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cmu09g0703 . 46 266 HSF AT1G32330 51.8 9.9e-58 221.5
Cmu07g0113 . 27 226 HSF AT1G32330 53.1 3.8e-57 219.5
Cmu08g1644 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cmu08g1539 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Cmu07g0113 . 41 262 HSF AT3G02990 52.6 2.9e-62 236.5
Cmu05g0528 . 38 241 HSF AT3G02990 57.6 2.4e-61 233.4
Cmu09g0703 . 58 281 HSF AT3G02990 52.4 1.9e-58 223.8
Cmu08g1644 . 43 242 HSF AT3G02990 51.7 5.8e-55 212.2
Cmu06g0879 . 10 172 HSF AT3G02990 50.3 3.7e-41 166.4
Cmu05g0528 . 25 287 HSF AT2G26150 52.3 3.4e-68 255.8
Cmu09g0703 . 46 265 HSF AT2G26150 54.3 5.1e-64 241.9
Cmu10g0989 . 29 243 HSF AT2G26150 58.8 1.2e-60 230.7
Cmu11g0168 . 28 247 HSF AT2G26150 51.1 9.0e-53 204.5
Cmu03g1335 . 5 156 HSF AT2G26150 52.0 3.9e-40 162.5
Cmu10g2660 . 290 546 HSF AT5G03720 57.1 1.5e-75 280.4
Cmu02g1814 . 2 189 HSF AT4G18880 52.1 1.7e-50 197.2
Cmu05g0334 . 6 462 HSF AT4G13980 50.2 2.3e-112 402.9
Cmu05g0528 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cmu08g1644 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cmu09g0703 . 46 384 HSF AT3G22830 53.4 5.2e-92 335.1
Cmu07g0113 . 16 350 HSF AT3G22830 50.9 6.6e-87 318.2
Cmu08g1644 . 31 253 HSF AT3G22830 54.1 2.1e-64 243.4
Cmu10g0989 . 12 242 HSF AT3G22830 55.7 2.3e-63 240.0
Cmu09g0703 . 45 359 HSF AT3G51910 50.9 2.0e-71 266.2
Cmu07g0113 . 26 322 HSF AT3G51910 52.5 8.3e-70 260.8
Cmu08g1644 . 31 223 HSF AT3G51910 56.0 4.9e-54 208.4
Cmu07g0113 . 27 321 HSF AT3G63350 50.3 4.4e-66 248.4
Cmu08g1644 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Cmu02g1814 . 5 140 HSF AT3G63350 57.2 4.6e-39 158.7
Cmu11g0168 . 32 248 HSF AT5G54070 51.4 2.5e-52 203.0
Cmu01g1632 . 46 337 HSF AT4G36990 51.8 2.3e-70 262.7
Cmu08g1539 . 17 115 HSF AT5G62020 67.7 1.9e-38 156.8
Cmu01g0289 . 64 385 HSF AT4G11660 51.9 8.0e-79 291.2
Cmu08g1539 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cmu01g1632 . 46 148 HSF AT4G11660 72.8 1.7e-41 167.2
Cmu03g1856 . 26 125 HSF AT4G11660 68.0 1.1e-38 157.9
Cmu10g0989 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cmu10g2324 . 14 222 HSF AT2G41690 53.6 5.4e-52 201.4
Cmu04g0415 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Cmu08g1539 . 9 372 HSF AT1G46264 52.9 2.1e-89 326.2
Cmu05g2061 . 1 238 HSF AT1G46264 63.8 2.1e-81 299.7
Cmu03g1856 . 25 206 HSF AT1G46264 51.9 2.9e-51 199.5
Cmu10g0989 . 33 138 HSF AT1G46264 73.6 3.6e-41 166.0
Cmu10g2324 . 21 118 HSF AT1G46264 68.4 7.0e-37 151.8
Cmu11g0236 . 10 181 HSF AT3G24520 65.1 2.4e-63 239.6
Cmu05g0528 . 37 237 HSF AT4G17750 59.6 1.8e-62 237.3
Cmu09g0703 . 57 298 HSF AT4G17750 51.0 1.9e-59 227.3
Cmu08g1644 . 42 242 HSF AT4G17750 54.6 6.0e-58 222.2
Cmu01g0289 . 41 163 HSF AT4G17750 61.8 3.6e-39 159.8
Cmu08g1539 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cmu05g2061 . 20 118 HSF AT4G17750 69.7 2.4e-38 157.1
Cmu05g0528 . 38 242 HSF AT5G16820 57.0 4.7e-60 229.2
Cmu07g0113 . 41 262 HSF AT5G16820 51.7 3.1e-59 226.5
Cmu09g0703 . 58 270 HSF AT5G16820 54.0 5.4e-56 215.7
Cmu08g1644 . 43 253 HSF AT5G16820 51.1 4.6e-55 212.6
Cmu01g2342 . 9 191 HSF AT5G16820 50.3 5.3e-43 172.6
Cmu06g0879 . 10 176 HSF AT5G16820 51.6 5.8e-42 169.1
Cmu10g0989 . 24 515 HSF AT1G32330 54.0 1.1e-120 430.6
Cmu05g0528 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cmu09g0703 . 46 266 HSF AT1G32330 51.8 9.9e-58 221.5
Cmu07g0113 . 27 226 HSF AT1G32330 53.1 3.8e-57 219.5
Cmu08g1644 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cmu08g1539 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Cmu07g0113 . 41 262 HSF AT3G02990 52.6 2.9e-62 236.5
Cmu05g0528 . 38 241 HSF AT3G02990 57.6 2.4e-61 233.4
Cmu09g0703 . 58 281 HSF AT3G02990 52.4 1.9e-58 223.8
Cmu08g1644 . 43 242 HSF AT3G02990 51.7 5.8e-55 212.2
Cmu06g0879 . 10 172 HSF AT3G02990 50.3 3.7e-41 166.4
Cmu05g0528 . 25 287 HSF AT2G26150 52.3 3.4e-68 255.8
Cmu09g0703 . 46 265 HSF AT2G26150 54.3 5.1e-64 241.9
Cmu10g0989 . 29 243 HSF AT2G26150 58.8 1.2e-60 230.7
Cmu11g0168 . 28 247 HSF AT2G26150 51.1 9.0e-53 204.5
Cmu03g1335 . 5 156 HSF AT2G26150 52.0 3.9e-40 162.5
Cmu10g2660 . 290 546 HSF AT5G03720 57.1 1.5e-75 280.4
Cmu02g1814 . 2 189 HSF AT4G18880 52.1 1.7e-50 197.2
Cmu05g0334 . 6 462 HSF AT4G13980 50.2 2.3e-112 402.9
Cmu05g0528 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cmu08g1644 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cmu09g0703 . 46 384 HSF AT3G22830 53.4 5.2e-92 335.1
Cmu07g0113 . 16 350 HSF AT3G22830 50.9 6.6e-87 318.2
Cmu08g1644 . 31 253 HSF AT3G22830 54.1 2.1e-64 243.4
Cmu10g0989 . 12 242 HSF AT3G22830 55.7 2.3e-63 240.0
Cmu09g0703 . 45 359 HSF AT3G51910 50.9 2.0e-71 266.2
Cmu07g0113 . 26 322 HSF AT3G51910 52.5 8.3e-70 260.8
Cmu08g1644 . 31 223 HSF AT3G51910 56.0 4.9e-54 208.4
Cmu07g0113 . 27 321 HSF AT3G63350 50.3 4.4e-66 248.4
Cmu08g1644 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Cmu02g1814 . 5 140 HSF AT3G63350 57.2 4.6e-39 158.7
Cmu11g0168 . 32 248 HSF AT5G54070 51.4 2.5e-52 203.0
Cmu01g1632 . 46 337 HSF AT4G36990 51.8 2.3e-70 262.7
Cmu08g1539 . 17 115 HSF AT5G62020 67.7 1.9e-38 156.8
Cmu01g0289 . 64 385 HSF AT4G11660 51.9 8.0e-79 291.2
Cmu08g1539 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cmu01g1632 . 46 148 HSF AT4G11660 72.8 1.7e-41 167.2
Cmu03g1856 . 26 125 HSF AT4G11660 68.0 1.1e-38 157.9
Cmu10g0989 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cmu10g2324 . 14 222 HSF AT2G41690 53.6 5.4e-52 201.4
Cmu04g0415 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Cmu08g1539 . 9 372 HSF AT1G46264 52.9 2.1e-89 326.2
Cmu05g2061 . 1 238 HSF AT1G46264 63.8 2.1e-81 299.7
Cmu03g1856 . 25 206 HSF AT1G46264 51.9 2.9e-51 199.5
Cmu10g0989 . 33 138 HSF AT1G46264 73.6 3.6e-41 166.0
Cmu10g2324 . 21 118 HSF AT1G46264 68.4 7.0e-37 151.8
Cmu11g0236 . 10 181 HSF AT3G24520 65.1 2.4e-63 239.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001764 2 9 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 2 5 4 2 69
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5906 PF00447 HSF_DNA-bind 1.10E-30 CL0123 Cmu TF