Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1336 ATGGCTGCCGCTGCGATTTTCTCGTCTTTACGAAGGAGGAGATCGCCGTCGCTGGAGGCTTTTTTGGCCCCCGTTGACCTCTCCGATGTAGCCTTAGTTCAAACCTTGGCGATAGTGGCGACCGAGCTAGTTTCTCGATTTTCAGAGAAATTCTTCTTCTTCCAGCGGAGGAATTCGCGATCTCTGATAAGGAAATTGGAGGTTTGTTTAGTCTTTTTGGAGTTTTTGAAGGAAACAAATGCGAATTTGCCTCATACAGCGTTGCTCTGTCTGAAGGAGCTGTATTTGTTGTTGTATCGGTCTAAGATACTTCTTGATTATTGCTCTGAATCGAGTAAGTTGTGGCTGTTGCTTCAGAACCACTCGATTTCTGGGCATTTCAATGATTTGAATTTGGAGTTGTTGACATTTTTTGATGTTTTCCCTCTTGAGGAAGTTGAATTGGGGGTGGATGTTAGAGAGCAGGTTGAGCTTTTGCAGAAGCAGTTGAGAAGGACTAGAATTTTTGTTGACGAACGTGACGAAGCATTGAGGACTCGCTTCCTCTTGTTCCTCGACGAGTTTGAGAATGGGAGGCTTCCCAACCCGAGGGAAATGAGGGAGTTTTTTGTGGATAAGTTGAAGATTCGGAACGCAAAGAGTTGTAGAGCTGAAATTGAGTTCTTGGAGGAGCAGATTGTCAATCATGAGGGTGATATTGAGCCTACGGTAGCGGTGTTAAACGGTTTCGTTGCTTTTACTAGATACAGTAGGTTTTTCCTCTTTGGATTTGAGGAAGATGAAGTTGATTCAGGCGCATCAAATCAGAAGAAGTTGAAGAAGAACTTGATTACTCAGGAAATTGCTGAGACGTTTTTAACTGTCCCGAGGGACTTCTGCTGCCCAATATCACTGGATTTGATGAAAGATCCAGTGATCATTTCTACAGGTCAGACATACGATCGCAGCTCGATTACTAGATGGATGGAAGAAGGCCACAACACTTGTCCGAAAACGGGGCAAATGCTCATTCATACCCGCCTTGCTCCCAACCGTGCATTGAGGAATTTGATCGTGCAATGGTGCATTGCTCATGGAGTTCCTTATGATCCACCAGAAGGGATGGATGCATCTGCAGAGAGTTATACAATGGCTTCTCCCACACGAGCTGCACTGGAAGCCAACAGAGCAACAGCTATGATCCTTATTCAACAATTATCCATTGGATCGCAGGATGCAAAGACAATTGCTGCTCGTGAGATTCGTTTATTAGCCAAAACAGGGAAAGAGAACCGTGCTTTCATCGCTGAAGCCGGTGCCATTCCCCATCTTCAAAAGTTGCTGGCTTCCCCAAACTCAGTTGCACAGGAGAATTCCGTGACTGCTATGCTTAACCTCTCAATATATGACAAGAACAAAAGTTTGATTATGAGTGAGGTAGGGTGTTTAGGATCGATAGCCCAAGTATTGAGATTTGGACATAGTACAGAAGCACGGGAAAACGCCGCAGCTACGTTATTCAGCCTGTCTGCAGTCCATGACTACAAGAAGAGAATAGCAGAGGAGGATGGTGCAGTTGAAGCATTGGCAGGGCTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAATCTCTCAACCCACACGGATAACTGCGTTCGGATGATAGAGGCCGGGGCAGTAACAGCTCTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAGGAAGCAGCTGGTGCATTGGCCTTGATTGTTAGACAGCCTGTTGGGGCCGAAGCAGTCGCTAAAGAGGAGAGAGCTGTGGCAGGATTGATAGCAATGATGCGATGTGGTACACCAAGAGGAAAAGAGAATGCAGTAGCAGCTTTGCTCGAGTTATGCCGGAGTGGTGGAGCTGCCACGACTGAGCAAGTGTTCAAGGCTCCCGCTTTGGCTGGCTTGCTCCAAACACTCCTATTTACCGGTACGAAGCGAGCACGAAGAAAGGCTGCTTCGCTAGCTAGAGTATTCCAGAGATGTGAGCATGTCACAATGCATTACGGCGGATTGGGGGTTGGTTACGCCTATGCAAATAACTCAGCTTCTAGCAGAGATTCAAACTTTGCAAGCGAGGTATCTGTGCCGATATCCATCTCGCTCACAAAGTTTGCATCTCTGAGAGCTCACAAAGCTATAGCCAAACACCTCGAAGAAACCAATAACGACTCTAAAAGATATGATCAAGGTCTTAAATTGCAAAGTGGCACAGTGTTTCGGATTAACAATTCAGTCGTGCAAGCCAACATCCAAAGACAAGTAACAATCACAAGCCTATTGGAGGTTCTCGACAAATCATCATTCAAGTCCTCGAAACAATATAGCTTTACTCTAAACATGGGTGCTCAGAAGGAAGGAGATATTAAACAAGAATACAAACTCTTTCTTCTCATGTTACAGAGTTTCATGCAGCTCACTGATATCTCCACCACAAAACATAAACCATCAATATTCACAGACTACAGGAAACAGAGAACTAATGGAAATGAAGCTTTGGCTGAAGCCACTCTCCCTAAATTGCTTTCCCTATTCATGATTCCTGAAGCATATGTGAACAACATGGAAGCAACAGATGCACTCATTGAAAAAGGAAAGGCTGCCCATTACTAA 2643 45.1 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLAIVATELVSRFSEKFFFFQRRNSRSLIRKLEVCLVFLEFLKETNANLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNHSISGHFNDLNLELLTFFDVFPLEEVELGVDVREQVELLQKQLRRTRIFVDERDEALRTRFLLFLDEFENGRLPNPREMREFFVDKLKIRNAKSCRAEIEFLEEQIVNHEGDIEPTVAVLNGFVAFTRYSRFFLFGFEEDEVDSGASNQKKLKKNLITQEIAETFLTVPRDFCCPISLDLMKDPVIISTGQTYDRSSITRWMEEGHNTCPKTGQMLIHTRLAPNRALRNLIVQWCIAHGVPYDPPEGMDASAESYTMASPTRAALEANRATAMILIQQLSIGSQDAKTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNSVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSIAQVLRFGHSTEARENAAATLFSLSAVHDYKKRIAEEDGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVAKEERAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHVTMHYGGLGVGYAYANNSASSRDSNFASEVSVPISISLTKFASLRAHKAIAKHLEETNNDSKRYDQGLKLQSGTVFRINNSVVQANIQRQVTITSLLEVLDKSSFKSSKQYSFTLNMGAQKEGDIKQEYKLFLLMLQSFMQLTDISTTKHKPSIFTDYRKQRTNGNEALAEATLPKLLSLFMIPEAYVNNMEATDALIEKGKAAHY 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8463062 8469304 - CmPI595203_03g013360.1 Cmu03g1336 412122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1336 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Cmu03g1336 880 SMART arm_5 547 585 IPR000225 GO:0005515(InterPro)
Cmu03g1336 880 SMART arm_5 506 546 IPR000225 GO:0005515(InterPro)
Cmu03g1336 880 SMART arm_5 463 504 IPR000225 GO:0005515(InterPro)
Cmu03g1336 880 SMART arm_5 587 627 IPR000225 GO:0005515(InterPro)
Cmu03g1336 880 SMART arm_5 421 461 IPR000225 GO:0005515(InterPro)
Cmu03g1336 880 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Cmu03g1336 880 SMART Ubox_2 291 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu03g1336 880 SUPERFAMILY RING/U-box 277 362 - -
Cmu03g1336 880 CDD RING-Ubox_PUB 289 341 IPR045210 -
Cmu03g1336 880 SUPERFAMILY ARM repeat 394 670 IPR016024 -
Cmu03g1336 880 Pfam U-box domain 288 358 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu03g1336 880 PANTHER U BOX DOMAIN-CONTAINING 55 672 - -
Cmu03g1336 880 Gene3D - 392 667 IPR011989 -
Cmu03g1336 880 FunFam RING-type E3 ubiquitin transferase 364 685 - -
Cmu03g1336 880 Coils Coil 212 232 - -
Cmu03g1336 880 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu03g1336 880 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515(InterPro)
Cmu03g1336 880 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515(InterPro)
Cmu03g1336 880 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1336 Cmu-Chr3:8463062 Cmu05g2175 Cmu-Chr5:31213570 1.80E-44 dispersed
Cmu03g1986 Cmu-Chr3:27831412 Cmu03g1336 Cmu-Chr3:8463062 7.30E-11 transposed
Cmu04g0693 Cmu-Chr4:21096870 Cmu03g1336 Cmu-Chr3:8463062 2.40E-105 transposed
Cmu08g1658 Cmu-Chr8:28211799 Cmu03g1336 Cmu-Chr3:8463062 9.20E-37 transposed
Cmu11g0608 Cmu-Chr11:6653490 Cmu03g1336 Cmu-Chr3:8463062 2.30E-92 transposed
Cmu03g1336 Cmu-Chr3:8463062 Cmu05g2395 Cmu-Chr5:33169770 6.30E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1336 - - - 0.0