Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1338 ATGGATGATAATGTTACCTTCAACAATAATAACCACCAATTCTTTTCGGCTGATCAACTTGAAGATTCCGACGAATCAAAACCCGCCCCTGATTCTCCTCCTCCTAATTCCGCCGCCGCCGCCACCGCCACCAAGAAGGGCAGAAGAGGGATGAAGAAGAAAGTTCTGTCGGTGAAAATTAATGGCGACAACCCAAGAAATTCCTCTGGTTCTACAACTCCACCTTCTGATGCTTGGGCCTGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCTCCTTATCCCAGGGCGTATTATAGGTGTAGTAGTTCAAAGGGATGTCCAGCGAGGAAGCAAGTAGAGAGGAATCGGCTTGATCCAACTATGTTGCTCATTACATATTCGTGTGAGCATAATCATTCCGGTCCGGTTTCTAGGAACAACAATTCCAACCACAACCAAACCGATGCGGTGAAACCCGATTCACCGGAGACGGTTCCGGTTGAAGTAGAAGAGAAATTTGTGGAGATAGTGGGAGAGGAGTCGTTGATAACGGGAGATGAGTTTAGTTGGTTTGGAGAAATGGAAACGACGTCGTCTACAGTGCTTGAAAGCTCCATTTTTTCGGGGAGAGCATCCAGTGGATTGGTGGATCATTCAATTTCAAGTGACGTGGCAATGCTTTTGCCCATGGGGGATGATGACATGGACGAATCACTCTTTGCGGATCTCGGCGAGTTGCCGGAATGTTCTCTGGTGTTCCGGCGTGGCGGAGGTCGGGGATTACCGGTGGATGAACAACCGGCTGCTGCCCAGCGGCGGATCACACCGTGGTGTGGAACCACCACATGA 831 49.58 MDDNVTFNNNNHQFFSADQLEDSDESKPAPDSPPPNSAAAATATKKGRRGMKKKVLSVKINGDNPRNSSGSTTPPSDAWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVERNRLDPTMLLITYSCEHNHSGPVSRNNNSNHNQTDAVKPDSPETVPVEVEEKFVEIVGEESLITGDEFSWFGEMETTSSTVLESSIFSGRASSGLVDHSISSDVAMLLPMGDDDMDESLFADLGELPECSLVFRRGGGRGLPVDEQPAAAQRRITPWCGTTT 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8526915 8527916 - CmPI595203_03g013380.1 Cmu03g1338 412124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1338 276 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 25 244 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Cmu03g1338 276 MobiDBLite consensus disorder prediction 134 153 - -
Cmu03g1338 276 FunFam WRKY transcription factor 65 59 136 - -
Cmu03g1338 276 MobiDBLite consensus disorder prediction 61 76 - -
Cmu03g1338 276 MobiDBLite consensus disorder prediction 1 79 - -
Cmu03g1338 276 MobiDBLite consensus disorder prediction 1 17 - -
Cmu03g1338 276 MobiDBLite consensus disorder prediction 134 160 - -
Cmu03g1338 276 Gene3D WRKY domain 63 137 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g1338 276 SMART WRKY_cls 75 135 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g1338 276 SUPERFAMILY WRKY DNA-binding domain 72 135 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g1338 276 ProSiteProfiles WRKY domain profile. 76 136 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g1338 276 Pfam WRKY DNA -binding domain 77 133 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1338 Cmu-Chr3:8526915 Cmu03g1450 Cmu-Chr3:10198678 1.90E-29 dispersed
Cmu03g1338 Cmu-Chr3:8526915 Cmu07g0308 Cmu-Chr7:3032564 8.00E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5907 PF03106 WRKY 6.90E-25 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1338 - - - 0.0