Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu03g1367 | ATGGTGATGGGAGAGAGAAAGAATAATAATGAAGATCAATACGAAGGTGGAATTAAGCTGTTTGGGGCAACAATTATGTTGCAAAATAACAGGCAAATCAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGCCAATAAATCAGATCAGCAATCACTAGAAAAAAGGCCTGAGAAGATCATCCCTTGCCCAAGATGCAAAAGCATGGACACCAAATTTTGTTACTTCAATAATTACAATGTTAATCAGCCAAGGCATTTCTGTAAGGGCTGCCAAAGGTATTGGACTGCCGGCGGGGCCCTTCGCAACGTCCCCGTCGGAGCCGGCCGTCGCAAAACCAAGCCCCCTTGTCGGACCTTCGCTGGCTTGCCGGAAAATTGTGTCTTTGATTCTTCAGGGATCGTTGCGGTTCAACCGTTTGAGTTGGAAGGGATGGTCGAGGAGTGGCATGTCGTCGCTGCCACCGCCACACAAGGCGGTTTTCGACAAATTTTACCGGTAAAGCGGCGGAGGGATTGCCAAGATGGCCAAACTTGTTGA | 540 | 47.41 | MVMGERKNNNEDQYEGGIKLFGATIMLQNNRQIKEEEEEEEEEEANKSDQQSLEKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFAGLPENCVFDSSGIVAVQPFELEGMVEEWHVVAATATQGGFRQILPVKRRRDCQDGQTC | 179 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8895953 | 8896492 | + | CmPI595203_03g013670.1 | Cmu03g1367 | 412153 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu03g1367 | 179 | MobiDBLite | consensus disorder prediction | 30 | 56 | - | - | |
Cmu03g1367 | 179 | Coils | Coil | 23 | 54 | - | - | |
Cmu03g1367 | 179 | Pfam | Dof domain, zinc finger | 59 | 114 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cmu03g1367 | 179 | ProSiteProfiles | Zinc finger Dof-type profile. | 61 | 115 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cmu03g1367 | 179 | PANTHER | CYCLIC DOF FACTOR 2 | 28 | 114 | IPR045174 | GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu03g1367 | 179 | ProSitePatterns | Zinc finger Dof-type signature. | 63 | 99 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu03g1367 | Cmu-Chr3:8895953 | Cmu10g2341 | Cmu-Chr10:29720011 | 2.90E-31 | dispersed | |
Cmu01g2315 | Cmu-Chr1:35341970 | Cmu03g1367 | Cmu-Chr3:8895953 | 2.70E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5909 | PF02701 | zf-Dof | 6.20E-32 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu03g1367 | - | - | - | 0.0 |