Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1367 ATGGTGATGGGAGAGAGAAAGAATAATAATGAAGATCAATACGAAGGTGGAATTAAGCTGTTTGGGGCAACAATTATGTTGCAAAATAACAGGCAAATCAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGCCAATAAATCAGATCAGCAATCACTAGAAAAAAGGCCTGAGAAGATCATCCCTTGCCCAAGATGCAAAAGCATGGACACCAAATTTTGTTACTTCAATAATTACAATGTTAATCAGCCAAGGCATTTCTGTAAGGGCTGCCAAAGGTATTGGACTGCCGGCGGGGCCCTTCGCAACGTCCCCGTCGGAGCCGGCCGTCGCAAAACCAAGCCCCCTTGTCGGACCTTCGCTGGCTTGCCGGAAAATTGTGTCTTTGATTCTTCAGGGATCGTTGCGGTTCAACCGTTTGAGTTGGAAGGGATGGTCGAGGAGTGGCATGTCGTCGCTGCCACCGCCACACAAGGCGGTTTTCGACAAATTTTACCGGTAAAGCGGCGGAGGGATTGCCAAGATGGCCAAACTTGTTGA 540 47.41 MVMGERKNNNEDQYEGGIKLFGATIMLQNNRQIKEEEEEEEEEEANKSDQQSLEKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFAGLPENCVFDSSGIVAVQPFELEGMVEEWHVVAATATQGGFRQILPVKRRRDCQDGQTC 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8895953 8896492 + CmPI595203_03g013670.1 Cmu03g1367 412153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1367 179 MobiDBLite consensus disorder prediction 30 56 - -
Cmu03g1367 179 Coils Coil 23 54 - -
Cmu03g1367 179 Pfam Dof domain, zinc finger 59 114 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu03g1367 179 ProSiteProfiles Zinc finger Dof-type profile. 61 115 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu03g1367 179 PANTHER CYCLIC DOF FACTOR 2 28 114 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g1367 179 ProSitePatterns Zinc finger Dof-type signature. 63 99 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1367 Cmu-Chr3:8895953 Cmu10g2341 Cmu-Chr10:29720011 2.90E-31 dispersed
Cmu01g2315 Cmu-Chr1:35341970 Cmu03g1367 Cmu-Chr3:8895953 2.70E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5909 PF02701 zf-Dof 6.20E-32 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1367 - - - 0.0