Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1389 ATGCTTCTCCACCCATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCCTCTCAAACCCTTCTCTTCTCTCCTTCTCTCTAACCCAAGAAGGCCTCTATCTCCACTCCATCAAGCTCTCTCTCGACGACCCAGATTCCTCTCTCCGCTCATGGAACGACCGCGACGACACTCCTTGTTCCTGGTTCGGCGTTTCTTGCGACCCTCAAACCAACTCCGTTCACTCTCTCGACCTCTCTAACACCAACATCGCCGGCCCATTTCCTTCTCTCCTTTGCCGTCTCCAGAATCTCTCATTCCTCTCCCTTTACAACAATTCCATCAACATGTCCCTTCCCTCTGTTATTTCCGACTGTACCAGTCTCCTCCATCTCGACCTCTCTCAGAATCTCCTCACCGGCGCGCTTCCTAGCTCGATTGCCGATCTCCCCAACCTTCAGTACTTGGATTTGACAGGGAATAACTTCTCCGGCGACATTCCGGAGAGTTTCGCTCGGTTTCGGAACTTGGAAGTTCTGTCGCTTGTTTATAATCTTCTCGATGGGCCGATGCCGGCGTTTCTCGGCAACATTACGTCATTGAAGATGTTGAACCTGTCTTATAACCCGTTTGTGCCGAGCCGGATCCCGCCGGAGTTCGGGAATTTGACGAATCTTGAGGTGCTCTGGTTGACTCAGTGTAATTTGGTTGGGGAAATTCCGCAGTCTTTTGGTCGGTTGAAGCGGCTTACCGATTTGGACTTGGCGTTGAATAATCTTGAAGGTCCGATTCCGAAGTCGCTCACGGAGTTGAGTAGCGTGGTTCAGATTGAGTTGTATAATAACTCGTTAACTGGTGAGTTGCCTTCTGGGTTTTCGAATCTGACTTCATTGCGACTGTTTGACGCTTCGATGAATGGTTTGACTGGGGCGATTCCGGATGAGTTGTGTCAATTGCCGCTTGAGAGTCTCAATCTCTACGAGAACAAGTTTGAAGGGAAATTACCGGAAAGCATTGCCAACTCGCGGGGTTTGTACGAACTCAGACTGTTCAGTAACCAGCTCACTGGCGAGTTACCGCGAAATCTTGGAAAGAACTCGCCGTTGAGATGGATGGATGTTTCCAACAACCAGTTTACGGGTGAAATCCCGGGGAATTTGTGTGAGAAGGGAGAGTTGGAGGAACTTCTGATGATCAACAACCAGTTTTCCGGCGAGATTCCGGCAAGTTTAGGTTCGTGCCAGAGTCTTACGAGGGTACGATTGGGTTATAATCTATTATCCGGCGAGGTACCGGCGGGATTTTGGGGCCTCCCACATGTGTATCTGTTGGAGCTGGTGAGTAACTCGTTTTCTGGGAAGATTTCGGATGCCATTGCCACTGCTAAGAACCTTTCGATTTTCATTATCTCTAAGAACAACTTCACCGGCACACTACCGACGGAGATGGGACGGCTGGAAAATCTTGTGAAGTTGCTAGCGACGGATAACAAACTAACTGGGTCACTACCAGGGAGTCTTGTGAATCTTAGGCATCTTTCGAGTTTAGATCTTCGGAATAATGAACTCTCTGGGGAACTTCCCAGTGGAATCAAATCGTGGAAGAATCTCAACGAACTCAATTTAGCAAACAATGAATTCACCGGTGAAATCCCCGAAGAAATCGGAAACTTGCCTGTTCTTAATTACCTTGATCTGTCTGGAAATCTGTTTTCTGGGGATGTCCCTCTTGGGTTACAGAATTTGAAGCTCAATCTACTCAATTTATCTTACAATCACTTGTCAGGTGAGCTTCCTCCATTTTTAGCTAAGGAAATCTACAGAAACAGCTTTTTGGGGAATCCAGATTTGTGTGGACATTTCGAAAGTTTGTGCAACAGCAAAGGTGAAGCTAAAAGCCAAGGCTCTCTCTGGTTGCTGCGTTCAATCTTCGTCCTTGCCGGTATCGTGTTCATCGTTGGTGTCATCTGGTTTTACCTCAAGTACAGGAAGTTTAAGATGGCAAAGAAAGAAATGGAGAAGAGCAAATGGACATTAATGTCCTTCCACAAGTTGGATTTCAGTGAATATGAGATCTTGGAATCCCTTGATGAAGATAACATCATAGGCAGTGGATCTTCTGGTAAAGTTTACAAAGTTGTGCTCAACAATGGTGAGGCTGTTGCAGTGAAGAAACTGTTTGGAGGGATGAGGAAAGACAGCGAAAAAGGCGATATCGAGAAGGGTCAAGTTCAAGACAATGCCTTCGAAGCCGAAATCGACACTCTGGGAAAGATTAGGCACAAAAACATTGTGAAGTTATGGTGCTGCTGTGTTACAAGAGACTACAAGCTTTTAGTCTATGAATATATGCCTAATGGAAGCTTGGGAGATTTGCTTCATAGTAGTAAAAAAGGATTGCTTGATTGGCCTACTAGGTTTAAGATAGCTTTAGATGCTGCAGAAGGACTTTCTTATCTTCACCACGATTGCGTCCCTCCAATCGTTCATCGCGACGTTAAGTCAAACAACATCTTGTTGGATGGCGATTTCGGAGCACGGTTAGCAGATTTCGGTGTAGCTAAAGTCATTGATTCAACCGGGAAAGGGCCTAAATCCATGTCGGTAATTGCAGGATCTTGCGGTTACATTGCGCCTGAGTATGCTTACACACTCCGAGTGAATGAAAAAAGCGATATATACAGTTTCGGCGTGGTGATTCTCGAGCTAATAACTGGGAGGCTCCCGGTCGATCCGGAGTTCGGAGAGAAGGACCTAGTGAAATGGGTGTGTTTCACATTGGATCAAGATGGGATCGATCAAGTGATCGACCGGAAACTGGATAGCTGTTTCAAGGAGGAAATATGCAGAGTCCTTAACATTGGGTTGCTTTGCACTAGCCCACTTCCCATCAACCGGCCATCAATGAGAAAAGTGGTGAAAATGCTGCAAGAAGTTGGGGCAGAGAACCAATTGAAAAGCAACAACAAAGATGGAAAGTTAACTCCTTACTATTATGAAGATGCATCAGATCAGGGAAGTGTAGCTTAG 3009 46.06 MLLHPFFFFFFFFFFIFLSNPSLLSFSLTQEGLYLHSIKLSLDDPDSSLRSWNDRDDTPCSWFGVSCDPQTNSVHSLDLSNTNIAGPFPSLLCRLQNLSFLSLYNNSINMSLPSVISDCTSLLHLDLSQNLLTGALPSSIADLPNLQYLDLTGNNFSGDIPESFARFRNLEVLSLVYNLLDGPMPAFLGNITSLKMLNLSYNPFVPSRIPPEFGNLTNLEVLWLTQCNLVGEIPQSFGRLKRLTDLDLALNNLEGPIPKSLTELSSVVQIELYNNSLTGELPSGFSNLTSLRLFDASMNGLTGAIPDELCQLPLESLNLYENKFEGKLPESIANSRGLYELRLFSNQLTGELPRNLGKNSPLRWMDVSNNQFTGEIPGNLCEKGELEELLMINNQFSGEIPASLGSCQSLTRVRLGYNLLSGEVPAGFWGLPHVYLLELVSNSFSGKISDAIATAKNLSIFIISKNNFTGTLPTEMGRLENLVKLLATDNKLTGSLPGSLVNLRHLSSLDLRNNELSGELPSGIKSWKNLNELNLANNEFTGEIPEEIGNLPVLNYLDLSGNLFSGDVPLGLQNLKLNLLNLSYNHLSGELPPFLAKEIYRNSFLGNPDLCGHFESLCNSKGEAKSQGSLWLLRSIFVLAGIVFIVGVIWFYLKYRKFKMAKKEMEKSKWTLMSFHKLDFSEYEILESLDEDNIIGSGSSGKVYKVVLNNGEAVAVKKLFGGMRKDSEKGDIEKGQVQDNAFEAEIDTLGKIRHKNIVKLWCCCVTRDYKLLVYEYMPNGSLGDLLHSSKKGLLDWPTRFKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARLADFGVAKVIDSTGKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELITGRLPVDPEFGEKDLVKWVCFTLDQDGIDQVIDRKLDSCFKEEICRVLNIGLLCTSPLPINRPSMRKVVKMLQEVGAENQLKSNNKDGKLTPYYYEDASDQGSVA 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9122072 9125182 - CmPI595203_03g013890.1 Cmu03g1389 412175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1389 1002 Gene3D Ribonuclease Inhibitor 265 335 IPR032675 -
Cmu03g1389 1002 Gene3D Ribonuclease Inhibitor 206 264 IPR032675 -
Cmu03g1389 1002 Gene3D Ribonuclease Inhibitor 336 621 IPR032675 -
Cmu03g1389 1002 Gene3D Transferase(Phosphotransferase) domain 1 777 996 - -
Cmu03g1389 1002 SMART serkin_6 689 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1389 1002 Pfam Leucine rich repeat 144 203 IPR001611 GO:0005515(InterPro)
Cmu03g1389 1002 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Cmu03g1389 1002 FunFam Receptor-like protein kinase HSL1 313 620 - -
Cmu03g1389 1002 SUPERFAMILY RNI-like 270 606 - -
Cmu03g1389 1002 SUPERFAMILY L domain-like 36 374 - -
Cmu03g1389 1002 Gene3D Phosphorylase Kinase; domain 1 653 776 - -
Cmu03g1389 1002 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 28 191 - -
Cmu03g1389 1002 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 777 986 - -
Cmu03g1389 1002 Pfam Protein kinase domain 692 909 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1389 1002 Pfam Leucine Rich Repeat 554 575 IPR001611 GO:0005515(InterPro)
Cmu03g1389 1002 Pfam Leucine Rich Repeat 386 407 IPR001611 GO:0005515(InterPro)
Cmu03g1389 1002 Pfam Leucine Rich Repeat 218 240 IPR001611 GO:0005515(InterPro)
Cmu03g1389 1002 Pfam Leucine Rich Repeat 314 334 IPR001611 GO:0005515(InterPro)
Cmu03g1389 1002 Pfam Leucine Rich Repeat 362 381 IPR001611 GO:0005515(InterPro)
Cmu03g1389 1002 Pfam Leucine Rich Repeat 121 143 IPR001611 GO:0005515(InterPro)
Cmu03g1389 1002 Pfam Leucine Rich Repeat 269 288 IPR001611 GO:0005515(InterPro)
Cmu03g1389 1002 Pfam Leucine Rich Repeat 529 551 IPR001611 GO:0005515(InterPro)
Cmu03g1389 1002 Pfam Leucine Rich Repeat 577 596 IPR001611 GO:0005515(InterPro)
Cmu03g1389 1002 Pfam Leucine Rich Repeat 505 526 IPR001611 GO:0005515(InterPro)
Cmu03g1389 1002 FunFam Receptor-like protein kinase HSL1 673 776 - -
Cmu03g1389 1002 SUPERFAMILY Protein kinase-like (PK-like) 680 969 IPR011009 -
Cmu03g1389 1002 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 12 972 IPR050647 -
Cmu03g1389 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1389 1002 FunFam Leucine-rich receptor-like protein kinase family protein 209 307 - -
Cmu03g1389 1002 Gene3D Ribonuclease Inhibitor 27 205 IPR032675 -
Cmu03g1389 1002 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524(InterPro)
Cmu03g1389 1002 ProSiteProfiles Protein kinase domain profile. 689 972 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1389 1002 SMART LRR_typ_2 95 119 IPR003591 -
Cmu03g1389 1002 SMART LRR_typ_2 288 312 IPR003591 -
Cmu03g1389 1002 SMART LRR_typ_2 143 166 IPR003591 -
Cmu03g1389 1002 SMART LRR_typ_2 216 240 IPR003591 -
Cmu03g1389 1002 SMART LRR_typ_2 503 526 IPR003591 -
Cmu03g1389 1002 SMART LRR_typ_2 191 215 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1389 Cmu-Chr3:9122072 Cmu10g1614 Cmu-Chr10:14227073 6.10E-94 dispersed
Cmu04g0145 Cmu-Chr4:2697751 Cmu03g1389 Cmu-Chr3:9122072 1.70E-23 dispersed
Cmu01g0156 Cmu-Chr1:1541727 Cmu03g1389 Cmu-Chr3:9122072 2.60E-18 transposed
Cmu02g0238 Cmu-Chr2:2254144 Cmu03g1389 Cmu-Chr3:9122072 4.30E-169 transposed
Cmu02g1634 Cmu-Chr2:30150663 Cmu03g1389 Cmu-Chr3:9122072 2.10E-11 transposed
Cmu02g1904 Cmu-Chr2:32975324 Cmu03g1389 Cmu-Chr3:9122072 4.30E-16 transposed
Cmu05g0068 Cmu-Chr5:709538 Cmu03g1389 Cmu-Chr3:9122072 9.10E-16 transposed
Cmu01g2274 Cmu-Chr1:35041667 Cmu03g1389 Cmu-Chr3:9122072 4.80E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75403 PF00069 Pkinase 1.50E-43 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1389 - - - 0.0