Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu03g1410 | ATGGATGAAGATGCTAATTCTTGGTTAAGAAGAACCAAGTTTTCTCACACAATATGTTATCGTTTAGAGTCCTTACGATTGGCTTCCTTTCCTGTGGTCACTCAGCCACCACTCAAATCAGTCGCACAATCAAGATCAACCCTTCCTAATAACCTAACCAAGCAGAGGTCTTTATCTCCTCCTCCACAAACTACACTCTCCGGCGCATTTAAGGATGCACGTACCGATCAAAAACGATTTTCAACTCCACAGCCTCAGAGGAAAGAACATGTAAAAGAAAAGGGTAAAAGGCTATTTAGTAAAAAAGCTAAGGTGCAAAATTCCCTGAAGGAAGAGAAGTTAAAAGGACCTTTGAGGCATCTTATATCTTTTAAAGGCAATGATAAGTTCAAATTCAAGGAGTCTTCTTGGACTAAGTTTGGCGGAGGGAAGGTCACTGCTGTTGAAGCTGAAGACGAATCGTCTATTGACCTGTCTAAGTTGATGTTTGGACATAGATTTGCTTTTGGAGCTCATAGTCGGCTATACCATGGAATTTATGAAGATAAAGTTGTTGCTGCTAAGATGATCAATCTACCAGTCCATGACGAAAATGGCGATCTTGCAGCTCGCTTAATAAAGCAATTTGGTAGGGAAGTAACCCTTTTGTCTCGTCTCCATCATCGCAATGTTATAAAGTTAGTAGCAGCAGTGAAAAAGCCACCCGTTTATTGCATCATCACTGAGTATCTACCTCAGGGTTCCTTGAGGGCATATCTTCACAAACTTGAAAAAAAATCTCTCCCATTGCAAAAACAAATTGCCATTGCCTTAGACATTGCTCGTGGGATGGAATACATTCACTCGCAAGGCGTCATTCATCGGGATCTCAAACCTGAGAACATTCTTATTGATCAAGACTTTTGTCTAAAGATTGCCGATTTTGGCATTGCTTGTGAGGAGGCACATTGTGATACACTGGCCGAGGACCCCGGAACTTTTCGTTGGATGGCCCCCGAGATGATCAAACGGAAACCTTACAGGAGAAAGGTCGATATCTACAGCTTCGGACTTCTCCTATGGGAATTGGTAGCTGGAAAAATCCCTTATGAGGATATGACTCCAATCCAAGCAGCTTTTGCAGTTGTAGATAAGAATATTAGACCGGTCATCCCGGGGGAGTGTCCTCCAGTGATGCAGATGTTAATCGAGCAATGTTGGTGCGAGAAACCGGAGAAGAGGCCGGAGTTTTGGCAGGTGGTGAAAGTGTTAGAGCAACTTGAGAGTTGTGTTGGGGAAGATGGTACATTGATGACGAATGTAGAGGTAGAGTTAGAGGGGAAGCCAAGTTGGGAAGATCACAAGAAAGGTTTAAAGCATTGGATACAGAAGTTTGGTCCTCTTCATTCTCATACTTCTCTCACCTCCAAATCTAAATTCATATGA | 1425 | 42.6 | MDEDANSWLRRTKFSHTICYRLESLRLASFPVVTQPPLKSVAQSRSTLPNNLTKQRSLSPPPQTTLSGAFKDARTDQKRFSTPQPQRKEHVKEKGKRLFSKKAKVQNSLKEEKLKGPLRHLISFKGNDKFKFKESSWTKFGGGKVTAVEAEDESSIDLSKLMFGHRFAFGAHSRLYHGIYEDKVVAAKMINLPVHDENGDLAARLIKQFGREVTLLSRLHHRNVIKLVAAVKKPPVYCIITEYLPQGSLRAYLHKLEKKSLPLQKQIAIALDIARGMEYIHSQGVIHRDLKPENILIDQDFCLKIADFGIACEEAHCDTLAEDPGTFRWMAPEMIKRKPYRRKVDIYSFGLLLWELVAGKIPYEDMTPIQAAFAVVDKNIRPVIPGECPPVMQMLIEQCWCEKPEKRPEFWQVVKVLEQLESCVGEDGTLMTNVEVELEGKPSWEDHKKGLKHWIQKFGPLHSHTSLTSKSKFI | 474 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 9349319 | 9351058 | + | CmPI595203_03g014100.1 | Cmu03g1410 | 412196 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu03g1410 | 474 | SMART | serkin_6 | 161 | 420 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu03g1410 | 474 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 59 | 420 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Cmu03g1410 | 474 | PRINTS | Tyrosine kinase catalytic domain signature | 388 | 410 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu03g1410 | 474 | PRINTS | Tyrosine kinase catalytic domain signature | 241 | 254 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu03g1410 | 474 | PRINTS | Tyrosine kinase catalytic domain signature | 279 | 297 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu03g1410 | 474 | PRINTS | Tyrosine kinase catalytic domain signature | 325 | 335 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu03g1410 | 474 | PRINTS | Tyrosine kinase catalytic domain signature | 344 | 366 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu03g1410 | 474 | ProSiteProfiles | Protein kinase domain profile. | 161 | 420 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu03g1410 | 474 | Gene3D | Transferase(Phosphotransferase) domain 1 | 245 | 452 | - | - | |
Cmu03g1410 | 474 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 285 | 297 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu03g1410 | 474 | MobiDBLite | consensus disorder prediction | 39 | 71 | - | - | |
Cmu03g1410 | 474 | MobiDBLite | consensus disorder prediction | 72 | 93 | - | - | |
Cmu03g1410 | 474 | Gene3D | Phosphorylase Kinase; domain 1 | 150 | 244 | - | - | |
Cmu03g1410 | 474 | FunFam | serine/threonine-protein kinase HT1 | 246 | 437 | - | - | |
Cmu03g1410 | 474 | Pfam | Protein tyrosine and serine/threonine kinase | 165 | 417 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu03g1410 | 474 | MobiDBLite | consensus disorder prediction | 39 | 98 | - | - | |
Cmu03g1410 | 474 | SUPERFAMILY | Protein kinase-like (PK-like) | 153 | 417 | IPR011009 | - | |
Cmu03g1410 | 474 | CDD | STKc_MAP3K-like | 168 | 417 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu03g1410 | Cmu-Chr3:9349319 | Cmu11g1140 | Cmu-Chr11:21537769 | 1.40E-72 | dispersed | |
Cmu01g2250 | Cmu-Chr1:34863101 | Cmu03g1410 | Cmu-Chr3:9349319 | 3.30E-166 | wgd | |
Cmu03g1410 | Cmu-Chr3:9349319 | Cmu05g2340 | Cmu-Chr5:32639373 | 7.30E-09 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75404 | PF07714 | PK_Tyr_Ser-Thr | 9.70E-60 | CL0016 | Cmu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu03g1410 | - | - | - | 0.0 |