Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1410 ATGGATGAAGATGCTAATTCTTGGTTAAGAAGAACCAAGTTTTCTCACACAATATGTTATCGTTTAGAGTCCTTACGATTGGCTTCCTTTCCTGTGGTCACTCAGCCACCACTCAAATCAGTCGCACAATCAAGATCAACCCTTCCTAATAACCTAACCAAGCAGAGGTCTTTATCTCCTCCTCCACAAACTACACTCTCCGGCGCATTTAAGGATGCACGTACCGATCAAAAACGATTTTCAACTCCACAGCCTCAGAGGAAAGAACATGTAAAAGAAAAGGGTAAAAGGCTATTTAGTAAAAAAGCTAAGGTGCAAAATTCCCTGAAGGAAGAGAAGTTAAAAGGACCTTTGAGGCATCTTATATCTTTTAAAGGCAATGATAAGTTCAAATTCAAGGAGTCTTCTTGGACTAAGTTTGGCGGAGGGAAGGTCACTGCTGTTGAAGCTGAAGACGAATCGTCTATTGACCTGTCTAAGTTGATGTTTGGACATAGATTTGCTTTTGGAGCTCATAGTCGGCTATACCATGGAATTTATGAAGATAAAGTTGTTGCTGCTAAGATGATCAATCTACCAGTCCATGACGAAAATGGCGATCTTGCAGCTCGCTTAATAAAGCAATTTGGTAGGGAAGTAACCCTTTTGTCTCGTCTCCATCATCGCAATGTTATAAAGTTAGTAGCAGCAGTGAAAAAGCCACCCGTTTATTGCATCATCACTGAGTATCTACCTCAGGGTTCCTTGAGGGCATATCTTCACAAACTTGAAAAAAAATCTCTCCCATTGCAAAAACAAATTGCCATTGCCTTAGACATTGCTCGTGGGATGGAATACATTCACTCGCAAGGCGTCATTCATCGGGATCTCAAACCTGAGAACATTCTTATTGATCAAGACTTTTGTCTAAAGATTGCCGATTTTGGCATTGCTTGTGAGGAGGCACATTGTGATACACTGGCCGAGGACCCCGGAACTTTTCGTTGGATGGCCCCCGAGATGATCAAACGGAAACCTTACAGGAGAAAGGTCGATATCTACAGCTTCGGACTTCTCCTATGGGAATTGGTAGCTGGAAAAATCCCTTATGAGGATATGACTCCAATCCAAGCAGCTTTTGCAGTTGTAGATAAGAATATTAGACCGGTCATCCCGGGGGAGTGTCCTCCAGTGATGCAGATGTTAATCGAGCAATGTTGGTGCGAGAAACCGGAGAAGAGGCCGGAGTTTTGGCAGGTGGTGAAAGTGTTAGAGCAACTTGAGAGTTGTGTTGGGGAAGATGGTACATTGATGACGAATGTAGAGGTAGAGTTAGAGGGGAAGCCAAGTTGGGAAGATCACAAGAAAGGTTTAAAGCATTGGATACAGAAGTTTGGTCCTCTTCATTCTCATACTTCTCTCACCTCCAAATCTAAATTCATATGA 1425 42.6 MDEDANSWLRRTKFSHTICYRLESLRLASFPVVTQPPLKSVAQSRSTLPNNLTKQRSLSPPPQTTLSGAFKDARTDQKRFSTPQPQRKEHVKEKGKRLFSKKAKVQNSLKEEKLKGPLRHLISFKGNDKFKFKESSWTKFGGGKVTAVEAEDESSIDLSKLMFGHRFAFGAHSRLYHGIYEDKVVAAKMINLPVHDENGDLAARLIKQFGREVTLLSRLHHRNVIKLVAAVKKPPVYCIITEYLPQGSLRAYLHKLEKKSLPLQKQIAIALDIARGMEYIHSQGVIHRDLKPENILIDQDFCLKIADFGIACEEAHCDTLAEDPGTFRWMAPEMIKRKPYRRKVDIYSFGLLLWELVAGKIPYEDMTPIQAAFAVVDKNIRPVIPGECPPVMQMLIEQCWCEKPEKRPEFWQVVKVLEQLESCVGEDGTLMTNVEVELEGKPSWEDHKKGLKHWIQKFGPLHSHTSLTSKSKFI 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9349319 9351058 + CmPI595203_03g014100.1 Cmu03g1410 412196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1410 474 SMART serkin_6 161 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1410 474 PANTHER SERINE-THREONINE PROTEIN KINASE 59 420 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cmu03g1410 474 PRINTS Tyrosine kinase catalytic domain signature 388 410 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1410 474 PRINTS Tyrosine kinase catalytic domain signature 241 254 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1410 474 PRINTS Tyrosine kinase catalytic domain signature 279 297 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1410 474 PRINTS Tyrosine kinase catalytic domain signature 325 335 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1410 474 PRINTS Tyrosine kinase catalytic domain signature 344 366 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1410 474 ProSiteProfiles Protein kinase domain profile. 161 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1410 474 Gene3D Transferase(Phosphotransferase) domain 1 245 452 - -
Cmu03g1410 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1410 474 MobiDBLite consensus disorder prediction 39 71 - -
Cmu03g1410 474 MobiDBLite consensus disorder prediction 72 93 - -
Cmu03g1410 474 Gene3D Phosphorylase Kinase; domain 1 150 244 - -
Cmu03g1410 474 FunFam serine/threonine-protein kinase HT1 246 437 - -
Cmu03g1410 474 Pfam Protein tyrosine and serine/threonine kinase 165 417 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1410 474 MobiDBLite consensus disorder prediction 39 98 - -
Cmu03g1410 474 SUPERFAMILY Protein kinase-like (PK-like) 153 417 IPR011009 -
Cmu03g1410 474 CDD STKc_MAP3K-like 168 417 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1410 Cmu-Chr3:9349319 Cmu11g1140 Cmu-Chr11:21537769 1.40E-72 dispersed
Cmu01g2250 Cmu-Chr1:34863101 Cmu03g1410 Cmu-Chr3:9349319 3.30E-166 wgd
Cmu03g1410 Cmu-Chr3:9349319 Cmu05g2340 Cmu-Chr5:32639373 7.30E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75404 PF07714 PK_Tyr_Ser-Thr 9.70E-60 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1410 - - - 0.0