Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1450 ATGTTCTGTAGTTTGTTTGAGATGGACAACAATTATCAGCAAGCTGGTGATTTGACTGATGTAATTCGACTCAGTTCCGCCGCCGTTGCCGGTGGCCTCTCATCGGAATTCTCTCTCGACCCTTCTTCCAGTGACCGACGACTCTGGCCTCACCTAACCGCCGATGAATCTTCAATGAATTTTGGAGATCCGTTGTTGTTTCCGACTAGTAGTGCTCGAGATCCGTTTCTTCATCCTCATTTTTCTGCCTTCAATTTAGCTTCTGACGGCGGCAGTGAGGGTTTGGCGGCGGTGGACCAGCCGTCTAATTTACTTTCACATATGTTGCAGATCTCTCCGAGTTCCGGTGATGGTGTAATTAGTACTCCTCCATGTGAGTCGTTCGCCACGGCGGTGGGGAATTCTCCGTGCTCGGCTTCAGCTTGCAGTGGCGGTGTCGTGCTTCCGACCGGTGGCTCGAATCCTCTTTGTTTAATGGAGAATTCTGGGATTCAGATCTCTTCCCCACGTAATTCCACCACTAAAAGAAGGAAGAGCCAAGTGAAGAAGGTGGTGTGCATTCCGGCACCGGCACCGGCGAACAACCGATCAAGCAGCGGTGAAGTGGTTCCTTCTGATCTATGGGCATGGAGGAAGTACGGACAAAAGCCCATCAAAGGATCCCCATATCCAAGGGGATATTATAGGTGCAGTAGCTCAAAGGGCTGCTCCGCTCGAAAGCAGGTCGAGCGCAGTCGAACCAACCCCAACATGCTTGTCATCACCTACACCTCGGAGCACAACCACCCATGGCCCACTCAACGCAATGCTCTTGCAGGCTCAACACGCTCCCACCCTTCTCGAACCCCTACCACCCCCACCGCTCGTAAAACAAGCCCAAAACACGAGCGCACCAACAACAACCAACCAACCACAACACTAAAGGAGGAAGAGATGGATGCAGACCAAACGACAGAAAAAGCAATAGTAACAACAACAAACGATCATCAGGAAGATGGAGATCATCAGAATTTCCCTTATGACTTAATTTTCACTGAATTTGCTGACCATGACAACGACCACGACCATCATCATCTTTCAGCAGACCCTCTAAACAACATCATCTTTAGTAGCCATGGCTTTAGTACAGGAAATGGAGAAGGGAGTAAAGATCCATTTTTGGAGCTCTATGATTGGGCAGATAATTCAAATGGAAGTTTGTTCAAAGAAGCCAAGGGAGGTTGA 1224 49.26 MFCSLFEMDNNYQQAGDLTDVIRLSSAAVAGGLSSEFSLDPSSSDRRLWPHLTADESSMNFGDPLLFPTSSARDPFLHPHFSAFNLASDGGSEGLAAVDQPSNLLSHMLQISPSSGDGVISTPPCESFATAVGNSPCSASACSGGVVLPTGGSNPLCLMENSGIQISSPRNSTTKRRKSQVKKVVCIPAPAPANNRSSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTNPNMLVITYTSEHNHPWPTQRNALAGSTRSHPSRTPTTPTARKTSPKHERTNNNQPTTTLKEEEMDADQTTEKAIVTTTNDHQEDGDHQNFPYDLIFTEFADHDNDHDHHHLSADPLNNIIFSSHGFSTGNGEGSKDPFLELYDWADNSNGSLFKEAKGG 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10198678 10202437 + CmPI595203_03g014500.1 Cmu03g1450 412236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1450 407 MobiDBLite consensus disorder prediction 259 314 - -
Cmu03g1450 407 ProSiteProfiles WRKY domain profile. 199 265 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g1450 407 SMART WRKY_cls 204 264 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g1450 407 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 72 358 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Cmu03g1450 407 SUPERFAMILY WRKY DNA-binding domain 202 265 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g1450 407 FunFam probable WRKY transcription factor 14 177 258 - -
Cmu03g1450 407 Gene3D WRKY domain 177 258 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g1450 407 MobiDBLite consensus disorder prediction 259 289 - -
Cmu03g1450 407 Pfam WRKY DNA -binding domain 206 263 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2484 Cmu-Chr1:36697054 Cmu03g1450 Cmu-Chr3:10198678 2.10E-52 dispersed
Cmu03g1338 Cmu-Chr3:8526915 Cmu03g1450 Cmu-Chr3:10198678 1.90E-29 dispersed
Cmu03g1450 Cmu-Chr3:10198678 Cmu07g0788 Cmu-Chr7:20006302 5.60E-30 dispersed
Cmu03g1450 Cmu-Chr3:10198678 Cmu05g0143 Cmu-Chr5:1251759 9.60E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5919 PF03106 WRKY 4.10E-25 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1450 - - - 0.0