Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu03g1450 | ATGTTCTGTAGTTTGTTTGAGATGGACAACAATTATCAGCAAGCTGGTGATTTGACTGATGTAATTCGACTCAGTTCCGCCGCCGTTGCCGGTGGCCTCTCATCGGAATTCTCTCTCGACCCTTCTTCCAGTGACCGACGACTCTGGCCTCACCTAACCGCCGATGAATCTTCAATGAATTTTGGAGATCCGTTGTTGTTTCCGACTAGTAGTGCTCGAGATCCGTTTCTTCATCCTCATTTTTCTGCCTTCAATTTAGCTTCTGACGGCGGCAGTGAGGGTTTGGCGGCGGTGGACCAGCCGTCTAATTTACTTTCACATATGTTGCAGATCTCTCCGAGTTCCGGTGATGGTGTAATTAGTACTCCTCCATGTGAGTCGTTCGCCACGGCGGTGGGGAATTCTCCGTGCTCGGCTTCAGCTTGCAGTGGCGGTGTCGTGCTTCCGACCGGTGGCTCGAATCCTCTTTGTTTAATGGAGAATTCTGGGATTCAGATCTCTTCCCCACGTAATTCCACCACTAAAAGAAGGAAGAGCCAAGTGAAGAAGGTGGTGTGCATTCCGGCACCGGCACCGGCGAACAACCGATCAAGCAGCGGTGAAGTGGTTCCTTCTGATCTATGGGCATGGAGGAAGTACGGACAAAAGCCCATCAAAGGATCCCCATATCCAAGGGGATATTATAGGTGCAGTAGCTCAAAGGGCTGCTCCGCTCGAAAGCAGGTCGAGCGCAGTCGAACCAACCCCAACATGCTTGTCATCACCTACACCTCGGAGCACAACCACCCATGGCCCACTCAACGCAATGCTCTTGCAGGCTCAACACGCTCCCACCCTTCTCGAACCCCTACCACCCCCACCGCTCGTAAAACAAGCCCAAAACACGAGCGCACCAACAACAACCAACCAACCACAACACTAAAGGAGGAAGAGATGGATGCAGACCAAACGACAGAAAAAGCAATAGTAACAACAACAAACGATCATCAGGAAGATGGAGATCATCAGAATTTCCCTTATGACTTAATTTTCACTGAATTTGCTGACCATGACAACGACCACGACCATCATCATCTTTCAGCAGACCCTCTAAACAACATCATCTTTAGTAGCCATGGCTTTAGTACAGGAAATGGAGAAGGGAGTAAAGATCCATTTTTGGAGCTCTATGATTGGGCAGATAATTCAAATGGAAGTTTGTTCAAAGAAGCCAAGGGAGGTTGA | 1224 | 49.26 | MFCSLFEMDNNYQQAGDLTDVIRLSSAAVAGGLSSEFSLDPSSSDRRLWPHLTADESSMNFGDPLLFPTSSARDPFLHPHFSAFNLASDGGSEGLAAVDQPSNLLSHMLQISPSSGDGVISTPPCESFATAVGNSPCSASACSGGVVLPTGGSNPLCLMENSGIQISSPRNSTTKRRKSQVKKVVCIPAPAPANNRSSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTNPNMLVITYTSEHNHPWPTQRNALAGSTRSHPSRTPTTPTARKTSPKHERTNNNQPTTTLKEEEMDADQTTEKAIVTTTNDHQEDGDHQNFPYDLIFTEFADHDNDHDHHHLSADPLNNIIFSSHGFSTGNGEGSKDPFLELYDWADNSNGSLFKEAKGG | 407 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 10198678 | 10202437 | + | CmPI595203_03g014500.1 | Cmu03g1450 | 412236 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu03g1450 | 407 | MobiDBLite | consensus disorder prediction | 259 | 314 | - | - | |
Cmu03g1450 | 407 | ProSiteProfiles | WRKY domain profile. | 199 | 265 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu03g1450 | 407 | SMART | WRKY_cls | 204 | 264 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu03g1450 | 407 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 72 | 358 | IPR044810 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER) | |
Cmu03g1450 | 407 | SUPERFAMILY | WRKY DNA-binding domain | 202 | 265 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu03g1450 | 407 | FunFam | probable WRKY transcription factor 14 | 177 | 258 | - | - | |
Cmu03g1450 | 407 | Gene3D | WRKY domain | 177 | 258 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu03g1450 | 407 | MobiDBLite | consensus disorder prediction | 259 | 289 | - | - | |
Cmu03g1450 | 407 | Pfam | WRKY DNA -binding domain | 206 | 263 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g2484 | Cmu-Chr1:36697054 | Cmu03g1450 | Cmu-Chr3:10198678 | 2.10E-52 | dispersed | |
Cmu03g1338 | Cmu-Chr3:8526915 | Cmu03g1450 | Cmu-Chr3:10198678 | 1.90E-29 | dispersed | |
Cmu03g1450 | Cmu-Chr3:10198678 | Cmu07g0788 | Cmu-Chr7:20006302 | 5.60E-30 | dispersed | |
Cmu03g1450 | Cmu-Chr3:10198678 | Cmu05g0143 | Cmu-Chr5:1251759 | 9.60E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5919 | PF03106 | WRKY | 4.10E-25 | CL0274 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu03g1450 | - | - | - | 0.0 |