Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1456 ATGAAGAGAGAGCTTGAAGATGATAGATCTACTGCAGGCTGTGGCCGCAGGGTTGTCAAAGGAGAGCGTTCTTCAATGTCGAGTGGGAAAGTGAAGATGTGGCAGGAGGAGGAGAAGAAAGACGGCGGCGGCGGCGGCGGAATGGATGAGTTGCTTGCTGTTTTGGGCTACAAGGTTCAAGCCTCGGAGATGGCGGATGTGGCTTTGAAGCTTGAACAGCTTGAGATGATGATGGGAGCTGCTCAGGAAGATGGGATTTCTCATCTTGCTTCTGATACTGTTCATTATAATCCTTCTGATCTCTCCGCTTGGGTTCAAAATATGCTCTCTGAATTCAATAATTCCACTAACCATTTTAACCCTCCCCCTCAATCTTCTCCGTATTCCAATTCTCACCACAGGATTCAATCCACCACATCGTGTTTATACGACGATGATTCTGAGTACGATCTTAGCGCCATTCCTGGTGTTGCAGTTTTGCCTCCTAAAGATTCCTCCACACAAACTGAAACTAATTCGCGTAAGCGATTGAAGATTGAAGGAGATATCGGTTCGGTGAATTTGTTACCGTCGCCGTCGCCGTCGTCTTCTTCACCGCCGTTTGTTGCTACGGCGGGGATTGGCTCTGAAACTTCGCGGCCGGTGGTGGTTGTGGAGGAGGATTCACAAGAGACTGGGATTCAACTTGTTCACGCTCTAATGGCTTGCGCTGAAGCGGTGCAGCAAGAGAATATGAAGCTCGCCGATGCGTTGGTGAAGCACATCGGATTTCTTGCAGCGTCGCAAGCCGGCGCTATGAGGAAAGTCGCGACGTATTTCGCTCAAGCCCTAGCTCGTCGGATTTACGGAATCTATTCTCCTCAAGACGGACTTTACTCCTCCTACTCCGATCCTCTCCAGATGCACTTTTACGAAACCTGTCCGTATCTGAAATTCGCGCATTTCACTGCGAATCAAGCTATTCTCGAAGCGTTCGCGACGGCGGCGAGAGTTCATGTCATCGATTTCAGTCTCAATCAAGGTATGCAATGGCCGGCGCTTATGCAAGCACTCGCATTACGCCCTGGAGGTCCGCCGGCGTTTCGATTGACTGGAATCGGCCCGCCGCAGCCAGATAATACGGCGGATTCGTTACAGCAAGTCGGTTGGAAGTTAGCGCAGTTGGCAGAGGCCATTGGTGTTGAGTTCGAGTTCAATCACATCGTGTGTAGTAGTCTAGCGGATCTCGACCCAGCGGCTCTGGAGATTCGACCGACGGCGGTGGAGGCGGTGGCGGTGAACTCAGTGTTCGATCTGCACCGCTTGTTGGCTCGGCCTGGAGCGATAGAGAAGGTTTTGGGATCGATAAAGACGACGAAGCCGAAGATCGTGACGATTGTGGAACAAGAAGCGAACCACAACGGGCCGATTTTCCTGGACCGGTTTACAGAGGCGCTGCATTATTACTCGAACCTGTTTGACTCGCTGGAGGGGTCGTCGACCGGGTTGGAACCGGCAAGTGAAGACGTGTTGCTGTCCGAGGTTTATTTGGGTAGGCAGATTTGCAACGTGGTGGCTTGTGAAGGAGCGAACCGAGTTGAGAGGCACGAGTCATTGACTCAGTGGCGAACTCGAATGGAATCGGCTGGGTTTGACCCGGTCCATCTCGGTTCGAACGCGTTTAAGCAAGCTAGTATGCTTTTGGCCCTCTTTGCTGGTGGAGAAGGGTACAGGGTGGAGGAGAATGATGGTTGTTTAATGCTAGGCTGGCACACTAGACCGTTGATTGCCACGTCAGCATGGCAACTCGCTCCCGATGAGTCAAAGTGA 1809 51.85 MKRELEDDRSTAGCGRRVVKGERSSMSSGKVKMWQEEEKKDGGGGGGMDELLAVLGYKVQASEMADVALKLEQLEMMMGAAQEDGISHLASDTVHYNPSDLSAWVQNMLSEFNNSTNHFNPPPQSSPYSNSHHRIQSTTSCLYDDDSEYDLSAIPGVAVLPPKDSSTQTETNSRKRLKIEGDIGSVNLLPSPSPSSSSPPFVATAGIGSETSRPVVVVEEDSQETGIQLVHALMACAEAVQQENMKLADALVKHIGFLAASQAGAMRKVATYFAQALARRIYGIYSPQDGLYSSYSDPLQMHFYETCPYLKFAHFTANQAILEAFATAARVHVIDFSLNQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTADSLQQVGWKLAQLAEAIGVEFEFNHIVCSSLADLDPAALEIRPTAVEAVAVNSVFDLHRLLARPGAIEKVLGSIKTTKPKIVTIVEQEANHNGPIFLDRFTEALHYYSNLFDSLEGSSTGLEPASEDVLLSEVYLGRQICNVVACEGANRVERHESLTQWRTRMESAGFDPVHLGSNAFKQASMLLALFAGGEGYRVEENDGCLMLGWHTRPLIATSAWQLAPDESK 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10331796 10333604 + CmPI595203_03g014560.1 Cmu03g1456 412242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1456 602 Pfam GRAS domain family 229 595 IPR005202 -
Cmu03g1456 602 ProSiteProfiles GRAS family profile. 220 595 IPR005202 -
Cmu03g1456 602 Coils Coil 64 84 - -
Cmu03g1456 602 SMART DELLA_2 49 122 - -
Cmu03g1456 602 MobiDBLite consensus disorder prediction 1 16 - -
Cmu03g1456 602 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 185 594 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Cmu03g1456 602 MobiDBLite consensus disorder prediction 157 176 - -
Cmu03g1456 602 Gene3D - 47 112 IPR038088 -
Cmu03g1456 602 Pfam Transcriptional regulator DELLA protein N terminal 49 116 IPR021914 -
Cmu03g1456 602 MobiDBLite consensus disorder prediction 1 46 - -
Cmu03g1456 602 FunFam DELLA protein GAI 47 112 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0606 Cmu-Chr1:6624201 Cmu03g1456 Cmu-Chr3:10331796 4.40E-193 dispersed
Cmu03g1456 Cmu-Chr3:10331796 Cmu05g1241 Cmu-Chr5:13176955 1.90E-175 dispersed
Cmu03g1456 Cmu-Chr3:10331796 Cmu01g1880 Cmu-Chr1:32360723 4.70E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5920 PF03514 GRAS 7.90E-135 CL0063 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1456 K14494 - csv:101213911 1036.56