Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu03g1460 | ATGGCACTTGCAAATTCAGCTCTACAAGAAGTGGATGGCATGGAGAAAAATGGTGGTTATTTGAAGACTTTAGCCATTGGAAAAGGCCATGAAAATCCAAATAGTAACTTCGTGTTTCGAAACACAACGAATTACCAACTCGATCAACAACAGCAGCAGCAGCAGCAGCAACAGTCTCTCATCAACTTCAAGTGTGGGATTGACAATACTATTTTGGGTGATAAGATGAATAACAATGAATCTTTGTTGAGCTTTGACGCACAAGGGATTTGTCAATTAGATCAAACTTACAATTGGGATGATCAGCAACGTGTGATGGAGGATCCTAATTGCTTTCAAACAGCTACCAATCACAATAATTATAGCCCTTCAAAAGATCACCATAATAAAAATGGAGATAATGGATCTGTTTATGAGTGGCTTTATTCTGAACCAACTACTCATTTTTCTGATGCCATTCAAGAAGCTGAAGCAACTCAAGAGATTATTGCCAATCACAAACGATCCCATACGGGGGAGAGCAGTGGGAGTGTTTGTAAGAAGCAATGCACTGTTGCAGCTAAGAAACAGAAACCCAAATCATCAACAGCCAAGGATCCACAGAGCATTGCAGCCAAGAATCGACGAGAAAGGATTAGCGAGAGGCTGAAGATATTGCAAGAATTGGTTCCCAATGGCTCCAAGGTTGATTTGGTAACCATGTTGGAGAAAGCAATTAGCTATGTCAAATTTCTTCAACTACAAGTGAAGATCCTAGCGACCGATGAATTTTGGCCTGTTGAAGGTGGGAAAGCTCCAGATATTTCACAAGTAAAGGAAGCCATTGATGTCATTCTTTCATCTCAAAGAGAAAGAAGCTCAAGTTCAAACAGTGAGAAGTGA | 882 | 40.25 | MALANSALQEVDGMEKNGGYLKTLAIGKGHENPNSNFVFRNTTNYQLDQQQQQQQQQQSLINFKCGIDNTILGDKMNNNESLLSFDAQGICQLDQTYNWDDQQRVMEDPNCFQTATNHNNYSPSKDHHNKNGDNGSVYEWLYSEPTTHFSDAIQEAEATQEIIANHKRSHTGESSGSVCKKQCTVAAKKQKPKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVEGGKAPDISQVKEAIDVILSSQRERSSSSNSEK | 293 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 10444913 | 10447583 | - | CmPI595203_03g014600.1 | Cmu03g1460 | 412246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu03g1460 | 293 | Pfam | Helix-loop-helix DNA-binding domain | 204 | 246 | IPR011598 | GO:0046983(InterPro) | |
| Cmu03g1460 | 293 | CDD | bHLH_AtIND_like | 197 | 259 | - | - | |
| Cmu03g1460 | 293 | FunFam | Transcription factor bHLH83 | 194 | 253 | - | - | |
| Cmu03g1460 | 293 | Gene3D | - | 189 | 253 | IPR036638 | GO:0046983(InterPro) | |
| Cmu03g1460 | 293 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 196 | 245 | IPR011598 | GO:0046983(InterPro) | |
| Cmu03g1460 | 293 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 54 | 258 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cmu03g1460 | 293 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 194 | 254 | IPR036638 | GO:0046983(InterPro) | |
| Cmu03g1460 | 293 | SMART | finulus | 202 | 251 | IPR011598 | GO:0046983(InterPro) | |
| Cmu03g1460 | 293 | MobiDBLite | consensus disorder prediction | 189 | 208 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu03g1460 | Cmu-Chr3:10444913 | Cmu10g1823 | Cmu-Chr10:22880395 | 2.10E-18 | dispersed | |
| Cmu03g1460 | Cmu-Chr3:10444913 | Cmu08g1581 | Cmu-Chr8:27534667 | 1.60E-18 | transposed | |
| Cmu03g1460 | Cmu-Chr3:10444913 | Cmu05g2113 | Cmu-Chr5:30658726 | 1.60E-18 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 5921 | PF00010 | HLH | 9.40E-08 | No_clan | Cmu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu03g1460 | - | - | - | 0.0 |