Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu03g1481 | ATGGCCATAAGCGGGGGAAGAGAGGAGGAGGAGGAGGAAAGAAGCCGACGGCGGCCGGATTCGTCGGAGGAGGAGGAGGAGTATAACGTAGAGAGCGTTGGTGAAGGGATAAAGTCGTCGCGAGGGAGCCGGTTCAATCTGATTCAGAAACAGTTGAGGATTGAACGGAATCGCAGAAGATTTAGCCGCGAAAATCTCATTAATGGCATTAAGTGCCTCGTTATCCTCCCTGACAGCAGGTGGTATAGGGCTTGGACGAAGTTCATACTAGTATGGGCAGTGTACTCTTCCTTCTTCACACCCATGGAATTCGGATTCTTCCGGGGATTACCAGAGAATCTATTTATACTCGACATTGTTGGACAAATTGCTTTCCTCTTTGACATTGTTTTCCAATTCTTCCTTGCCTACAGAGACAGCCAGACATACCGAATGGTCTATAAGCGCACTCCAATAGCACTCAAGTACTTGAAATCCACCTTTGTGACTGATTTGCTCAGCTGTTTGCCCTGGGACATCATTTATAAGGCTTGTGGGAAGAGAGAAGAGGTGAGATACCTTCTATGGATAAGGTTATTTCGGGTGCGGAAAGTCGATGCCTTTTTTCAGACGATGGAGAAGGATATACGTATTAATTATATGTTTACTAGAATTGTCAAGCTACTTGTTGTTGAACTTTACTGCACACATACTGCGGCCTGCATCTTTTACTATTTGGCAACTACTCTTCCTGCTTCTGAAGAAGGGTACACATGGATCGGAAGCTTAAAATTAGGGGACTACAGTTACTCACATTTCAGAGATATTGATTTATGGAAACGCTACACCACATCTTTATATTTTGCTATTGTAACCATGGCCACTGTTGGTTATGGAGATATACATGCAGTCAACTTAAGGGAAATGATATTCATTATGATTTATGTGTCATTTGACATGGTTCTCGGTGCTTACTTGATTGGTAACATGACTGCATTGATTGTAAAAGGATCCAAGACGGTGAAATTCAGGGATAAAATGGCAGATGTAATGAAATACATGAACAGAAATAGACTTAGCAGGGATATCCGTGATCAGATCAAGGGTCACTTACGTTTACAGTATGAAAGTAGCTACACTGAGGCTACTGTTCTACAGGACATCCCAATATCAATCCGTGCTAAGATTTCCCAATCATTGTACTTGCCTTATATTCAGAATGTTTCTCTCTTTAGAGGATGCTCCCCAGAGTTCATCAATCAAATAGTTATTAGACTCCATGAAGAGTTTTTTCTGCCTGGAGAGGTGATAATGGAACAAGGAAATGTAGTTGATCAACTTTATTTTGTATGCCATGGTGTGCTGGAGGAAGTAGGAATAGGACAAGATGGTTCAGAAGAGACCATAGATTTACTACAACCCAACAGCTCTTTTGGAGAGATTTCAATTCTTTGCAACATTCCTCAACCTTATACAGTTCGAGTGTGTGAATTATGTAGACTCTTGCGCCTTGATAAGCAGTCCTTTACAAATATCCTTGACATATACTTTTACGATGGGAGGAAAATCTTGAACAACCTTCTACAGGGAAAAGAAACGAACCTTCGAGTAAAGCAATTGGAGTCCGATATCACATTTCATATTGGTAAACAAGAAGCTGAACTTGCTCTCAAGGTGAACAGTGCAGCATATCATGGTGATCTGTACCAATTAAAAGGCCTTGTTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGAAGGTCGCCTTTGCATCTTGCAGCATCCAGAGGATTCGAGGATATAGTAGTTTTCCTTATTCAGGAAGGAGTAAACATTGACCTTAAAGATAATTTTGGCAATACACCATTATTGGAAGCCATCAAGAATGGGAACGATCAAGTTGCTGTTTTGCTTTCTAAACAAGGTGCTTCATTGAAGGTTGAAAATCCTGGTAGCTTCCTCTGTACAGCAGTTTCAAGGGGTGATTCGGATCTTCTAAAGAGATTATTGTGCTATGGCATTGATCCCAACTCCAAAGATTATGATTTCCGAACTCCACTACATATAGCTGCCTCAGAAGGGCTAACTTTGATGGCAAAATTGCTCTTAGAATCTGGGGCTAGTGTTTTCTCAAAGGACAGATGGGGAAACACCCCGCTTGATGAAGGCCGAATTTGTGGAAATAAGAATATGCTTAAGCTCTTGGAAGAGGCAAGAGCTTCTCAGTTGTCAGAATCTCCTTATTCCTCTCGAGAATTCCCAGACAAAAAACACTCAAAGAAATGTACAGTGTTCCCCTTCCACCCATGGGATCGTGAAGAAAACAAAAGACCTGGAATTATGCTATGGGTTCCACTCACTATTGAAGAGCTGATCAAGGAATCATCAGAGCAGCTACAAGTTTCAGGTGAATGTTGTATATTATCAGAAGATGGGGGTAAAATTCTTGATGTCCATATGATTGATGAAAGTCAAAAGCTGTATCTAGTTCCTGAAACTCATTAA | 2490 | 41.33 | MAISGGREEEEEERSRRRPDSSEEEEEYNVESVGEGIKSSRGSRFNLIQKQLRIERNRRRFSRENLINGIKCLVILPDSRWYRAWTKFILVWAVYSSFFTPMEFGFFRGLPENLFILDIVGQIAFLFDIVFQFFLAYRDSQTYRMVYKRTPIALKYLKSTFVTDLLSCLPWDIIYKACGKREEVRYLLWIRLFRVRKVDAFFQTMEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTLPASEEGYTWIGSLKLGDYSYSHFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMADVMKYMNRNRLSRDIRDQIKGHLRLQYESSYTEATVLQDIPISIRAKISQSLYLPYIQNVSLFRGCSPEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGIGQDGSEETIDLLQPNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLQGKETNLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGFEDIVVFLIQEGVNIDLKDNFGNTPLLEAIKNGNDQVAVLLSKQGASLKVENPGSFLCTAVSRGDSDLLKRLLCYGIDPNSKDYDFRTPLHIAASEGLTLMAKLLLESGASVFSKDRWGNTPLDEGRICGNKNMLKLLEEARASQLSESPYSSREFPDKKHSKKCTVFPFHPWDREENKRPGIMLWVPLTIEELIKESSEQLQVSGECCILSEDGGKILDVHMIDESQKLYLVPETH | 829 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 11118857 | 11128709 | + | CmPI595203_03g014810.1 | Cmu03g1481 | 412267 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu03g1481 | 829 | ProSiteProfiles | KHA domain profile. | 756 | 829 | IPR021789 | - | |
| Cmu03g1481 | 829 | Gene3D | Jelly Rolls | 387 | 528 | IPR014710 | - | |
| Cmu03g1481 | 829 | ProSiteProfiles | Ankyrin repeat region circular profile. | 677 | 709 | - | - | |
| Cmu03g1481 | 829 | PRINTS | Ankyrin repeat signature | 581 | 596 | IPR002110 | GO:0005515(InterPro) | |
| Cmu03g1481 | 829 | PRINTS | Ankyrin repeat signature | 693 | 707 | IPR002110 | GO:0005515(InterPro) | |
| Cmu03g1481 | 829 | ProSiteProfiles | Ankyrin repeat region circular profile. | 613 | 644 | - | - | |
| Cmu03g1481 | 829 | SUPERFAMILY | cAMP-binding domain-like | 331 | 522 | IPR018490 | - | |
| Cmu03g1481 | 829 | ProSiteProfiles | Ankyrin repeat region circular profile. | 580 | 612 | - | - | |
| Cmu03g1481 | 829 | Gene3D | - | 85 | 329 | - | - | |
| Cmu03g1481 | 829 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 403 | 523 | IPR000595 | - | |
| Cmu03g1481 | 829 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Cmu03g1481 | 829 | PRINTS | EAG/ELK/ERG potassium channel family signature | 118 | 128 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cmu03g1481 | 829 | PRINTS | EAG/ELK/ERG potassium channel family signature | 227 | 237 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cmu03g1481 | 829 | PRINTS | EAG/ELK/ERG potassium channel family signature | 319 | 328 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cmu03g1481 | 829 | PRINTS | EAG/ELK/ERG potassium channel family signature | 275 | 292 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cmu03g1481 | 829 | FunFam | Potassium channel SKOR | 83 | 328 | - | - | |
| Cmu03g1481 | 829 | Gene3D | - | 646 | 741 | IPR036770 | - | |
| Cmu03g1481 | 829 | Gene3D | - | 537 | 645 | IPR036770 | - | |
| Cmu03g1481 | 829 | Pfam | KHA, dimerisation domain of potassium ion channel | 755 | 824 | IPR021789 | - | |
| Cmu03g1481 | 829 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Cmu03g1481 | 829 | Gene3D | Helix hairpin bin | 330 | 386 | - | - | |
| Cmu03g1481 | 829 | FunFam | Potassium channel KAT2 | 391 | 527 | - | - | |
| Cmu03g1481 | 829 | Pfam | Ankyrin repeats (3 copies) | 649 | 731 | IPR002110 | GO:0005515(InterPro) | |
| Cmu03g1481 | 829 | Pfam | Ankyrin repeats (3 copies) | 555 | 642 | IPR002110 | GO:0005515(InterPro) | |
| Cmu03g1481 | 829 | ProSiteProfiles | Ankyrin repeat profile. | 580 | 612 | IPR002110 | GO:0005515(InterPro) | |
| Cmu03g1481 | 829 | SMART | ANK_2a | 710 | 739 | IPR002110 | GO:0005515(InterPro) | |
| Cmu03g1481 | 829 | SMART | ANK_2a | 677 | 706 | IPR002110 | GO:0005515(InterPro) | |
| Cmu03g1481 | 829 | SMART | ANK_2a | 613 | 642 | IPR002110 | GO:0005515(InterPro) | |
| Cmu03g1481 | 829 | SMART | ANK_2a | 644 | 673 | IPR002110 | GO:0005515(InterPro) | |
| Cmu03g1481 | 829 | SMART | ANK_2a | 580 | 609 | IPR002110 | GO:0005515(InterPro) | |
| Cmu03g1481 | 829 | ProSiteProfiles | Ankyrin repeat profile. | 677 | 709 | IPR002110 | GO:0005515(InterPro) | |
| Cmu03g1481 | 829 | SMART | cnmp_10 | 403 | 521 | IPR000595 | - | |
| Cmu03g1481 | 829 | Pfam | Ion transport protein | 82 | 330 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu03g1481 | 829 | SUPERFAMILY | Voltage-gated potassium channels | 77 | 328 | - | - | |
| Cmu03g1481 | 829 | SUPERFAMILY | Ankyrin repeat | 552 | 732 | IPR036770 | - | |
| Cmu03g1481 | 829 | PANTHER | POTASSIUM CHANNEL AKT1 | 38 | 824 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Cmu03g1481 | 829 | ProSiteProfiles | Ankyrin repeat profile. | 613 | 645 | IPR002110 | GO:0005515(InterPro) | |
| Cmu03g1481 | 829 | Pfam | Cyclic nucleotide-binding domain | 423 | 507 | IPR000595 | - | |
| Cmu03g1481 | 829 | CDD | CAP_ED | 403 | 517 | IPR000595 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu03g1481 | Cmu-Chr3:11118857 | Cmu06g1123 | Cmu-Chr6:21900876 | 1.10E-88 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu03g1481 | K21867 | - | csv:101210912 | 1546.56 |