Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1564 ATGGACGCAAGCTCTATAGACGAAAGCACCGCCAGTGACTCCACCTCCATTTCTCCCGTCACTCCATTACTCTTCCACTCATCGCCCTCCGCTACGGCGGAGGCCGAGTCCCGTAAACTTCCTTCTTCCCGTTTCAAAGGTGTCGTCCCTCAGCCCAACGGCCGATGGGGCGCTCAGATTTACGAGAAACACCAAAGAGTATGGCTAGGCACTTTCAACGAAGAACACGACGCCGCCAAGGCTTACGACATCGCCGCCCTCCGCTTCCGTGGCCGCGACGCCGTCACCAACTTCAAACCCCTCCACCACGACGACCACGCCGCCGTCGAGGCCGACTTTCTCAACTCCCACTCTAAGCTCGAGATCGTGGACATGCTCCGCAAACACACCTACAATGACGAACTCCAGCAGAGCAAACGCCAGAGGGGGCCCACGACGGCGGATTCAGCCTCCGGAACGTCCCCTAATTACTCTGGGTGGGATTCGAAGAGGGAAGTGCTGTTCGAGAAAACCGTGACGCCGAGTGACGTGGGGAAGCTGAACAGGCTGGTGATTCCGAAGCAACACGCGGAGAAGAATTTCCCGATGGGGGAGGGGGTGGTTCTAGGGAAAGGAATGCTTTTAAACTTCGAGGATATGGGAGGGAAGGTTTGGCGGTTCCGGTACTCGTATTGGAATAGCAGCCAGAGCTATGTGTTGACTAAAGGCTGGAGCCGCTTCGTTAAAGACAACACTCTCCGAGCCGGAGATGTGGTTCGGTTCCTCCGCTCCACCGGCCCAGATAAGCAGCTTTACATCCATGCTAACCCCACCCCTGGACCCGCAATTAACCCGGTTCATGTTGTCAAGCTTTTTGGAGTCAATATTTTGCAATTGCCAGTGGGGAAGACAGAAGGGGTATTCTTGGAATTACAACCTACCAAGAAGCAAAGAATAATCAAACCTTTGTAA 951 54.68 MDASSIDESTASDSTSISPVTPLLFHSSPSATAEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEHDAAKAYDIAALRFRGRDAVTNFKPLHHDDHAAVEADFLNSHSKLEIVDMLRKHTYNDELQQSKRQRGPTTADSASGTSPNYSGWDSKREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPMGEGVVLGKGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDNTLRAGDVVRFLRSTGPDKQLYIHANPTPGPAINPVHVVKLFGVNILQLPVGKTEGVFLELQPTKKQRIIKPL 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15337986 15338936 - CmPI595203_03g015640.1 Cmu03g1564 412350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1564 316 CDD B3_DNA 167 267 IPR003340 GO:0003677(InterPro)
Cmu03g1564 316 SMART rav1_2 44 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g1564 316 FunFam AP2 domain-containing protein RAP2.8 43 100 - -
Cmu03g1564 316 Gene3D AP2/ERF domain 43 100 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g1564 316 ProSiteProfiles B3 DNA-binding domain profile. 168 272 IPR003340 GO:0003677(InterPro)
Cmu03g1564 316 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 43 271 IPR044800 GO:0003700(InterPro)
Cmu03g1564 316 MobiDBLite consensus disorder prediction 137 158 - -
Cmu03g1564 316 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Cmu03g1564 316 Gene3D - 158 274 IPR015300 -
Cmu03g1564 316 ProSiteProfiles AP2/ERF domain profile. 44 99 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g1564 316 CDD AP2 43 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g1564 316 SMART B3_2 168 270 IPR003340 GO:0003677(InterPro)
Cmu03g1564 316 MobiDBLite consensus disorder prediction 1 23 - -
Cmu03g1564 316 SUPERFAMILY DNA-binding domain 43 99 IPR016177 GO:0003677(InterPro)
Cmu03g1564 316 MobiDBLite consensus disorder prediction 133 158 - -
Cmu03g1564 316 Pfam B3 DNA binding domain 168 262 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1564 Cmu-Chr3:15337986 Cmu06g1286 Cmu-Chr6:24025250 1.80E-44 dispersed
Cmu03g1564 Cmu-Chr3:15337986 Cmu05g2358 Cmu-Chr5:32784659 1.50E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5926 PF02362 B3 1.60E-27 CL0405 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1564 K09287 - csv:101206328 566.614