Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1572 ATGCAGCAAAGTTGGAAGTTGAGTTGCATATCATCAAGTGAGAGTGGATGTTTGGAGGGTGATGAAGAAGGAGAAGAATCCATTTTCCTTTCCCTTTCCCCTCCTGGCCAACGCCATTCATTCTCTTCCAAACAACAACAACAACAATCTTCTCTTCAAAACCCTAATCATCATCAAAATGCTGCCGCCGTCACCGTCGCAATGCACATTGGCCCTCCTCCTCTCTCCTCCTCCTCCGCCCCTGCGGTCCGCCCCCTCGACGCCGCACACTACTGGATCCCTACACCTGCCCAAATCCTCGTTGGTCCCACCCAATTCTCCTGCTCTGTCTGTACTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGTCATGGCTCAGAGTACAGAAAAGGGCCAGAATCATTAAGAGGATCAAAGCCAGCTTCATCAATGCTTAAGCTTCCATGCTATTGCTGTGCAGAAGGGTGCAAGAACAACATAGAGCATCCAAGGTCAAGGCCATTGAAAGACTTCAGGACTCTTCAAACTCATTACAAGAGAAAGCATGGAGCAAAGCCTTTCAGTTGTAGGAAATGTGGGAAGCCATTTGCTGTAAGAGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGTATTTGTGGCTCTGATTTTAAACACAAAAGATCCCTTAAAGACCATGTTAGAGCCTTTGGAGATGGCCATGCACCTCATACTGTCCAACTTTGTGAGGTTGAAGATGATGATGATTGGGATGATCATGATGATGATGATCATATAAATGGACCTCAACCCTGGTCCATTTATCATTAA 834 46.04 MQQSWKLSCISSSESGCLEGDEEGEESIFLSLSPPGQRHSFSSKQQQQQSSLQNPNHHQNAAAVTVAMHIGPPPLSSSSAPAVRPLDAAHYWIPTPAQILVGPTQFSCSVCTKTFNRYNNMQMHMWGHGSEYRKGPESLRGSKPASSMLKLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDDWDDHDDDDHINGPQPWSIYH 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15833256 15834572 - CmPI595203_03g015720.1 Cmu03g1572 412358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1572 277 Gene3D Classic Zinc Finger 187 246 - -
Cmu03g1572 277 MobiDBLite consensus disorder prediction 33 59 - -
Cmu03g1572 277 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Cmu03g1572 277 FunFam Zinc finger protein WIP2 160 242 - -
Cmu03g1572 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Cmu03g1572 277 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 190 214 - -
Cmu03g1572 277 SUPERFAMILY beta-beta-alpha zinc fingers 101 129 IPR036236 -
Cmu03g1572 277 Gene3D Classic Zinc Finger 105 128 - -
Cmu03g1572 277 SUPERFAMILY beta-beta-alpha zinc fingers 174 211 IPR036236 -
Cmu03g1572 277 PANTHER ZINC FINGER PROTEIN WIP2 86 262 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Cmu03g1572 277 SMART c2h2final6 106 128 IPR013087 -
Cmu03g1572 277 SMART c2h2final6 154 186 IPR013087 -
Cmu03g1572 277 SMART c2h2final6 191 211 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1572 Cmu-Chr3:15833256 Cmu10g2462 Cmu-Chr10:31211233 9.30E-85 dispersed
Cmu03g1572 Cmu-Chr3:15833256 Cmu02g2312 Cmu-Chr2:36662979 2.90E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5927 PF00096 zf-C2H2 0.0089 CL0361 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1572 - - - 0.0