Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1637 ATGAAGCTCCAAGTCGCCGACGACGATCTCGACGCCCTTCTTCTTCCTCCTCCTAACTTCTCCATGGTTGAGGACGGCATTTTCCGATCCGGCTTCCCTCAGCCCCTCAATTTCCCCTTCCTCCGCACCCTCAATCTCCGCTCCATCATATATTTGTGTCCTGAACCCTACCCAGAGGAGAATTTGGAGTTTCTTAAAGCTAATAATATCAAGCTTTTTCAATTCAAAATTGAAGGCAAAAAGGAGCCTTTCGTTTCGATTCCAGAGGATGCTATTCTTGAGGCTCTAAAAATCCTGATTGATGTTAGGAATCACCCCATTTTGATCCACTGCAAGCGAGGAAAGCTAATAAAGCCTTCATTTGTCCCACAATCACAGCATCGAACAGGCTCGCTCGTTGGTTGCCTGAGGAAGTTTCAGAACTGGTGCTTGAGTTCGGTGTTCGAGGAGTACCAGCGATTTGCAGGCATGAAATCGAGGGTGACGGATCTACAATTCATCGAGAAATTCGACATTGGGTCTCTGAGGCAATGTGTTTACAGCATCATATATCAGTATCAAGGTCAAACCAAACATCCTTTGACATTCATTGCAAGGACTCTTTTGTGGCAATATGGTGTAAATGTGAGTTATGTTAAGGCTCAGAAAGATAGTGAGTTTGCACTCAATTCCATCAGAGGGACTCCTGAGTCCTCATATGGCCTTTTGCCTTCGTCCTCAGATGTAGATTCAATTTTAGGCAGTGATTTGGGTATCTCATCTTTAGGTGGAGCCTGCATAATATAG 786 44.78 MKLQVADDDLDALLLPPPNFSMVEDGIFRSGFPQPLNFPFLRTLNLRSIIYLCPEPYPEENLEFLKANNIKLFQFKIEGKKEPFVSIPEDAILEALKILIDVRNHPILIHCKRGKLIKPSFVPQSQHRTGSLVGCLRKFQNWCLSSVFEEYQRFAGMKSRVTDLQFIEKFDIGSLRQCVYSIIYQYQGQTKHPLTFIARTLLWQYGVNVSYVKAQKDSEFALNSIRGTPESSYGLLPSSSDVDSILGSDLGISSLGGACII 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19133120 19139298 - CmPI595203_03g016370.1 Cmu03g1637 412423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1637 261 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 192 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Cmu03g1637 261 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791(InterPro)
Cmu03g1637 261 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791(InterPro)
Cmu03g1637 261 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791(InterPro)
Cmu03g1637 261 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791(InterPro)
Cmu03g1637 261 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 170 IPR029021 -
Cmu03g1637 261 FunFam probable tyrosine-protein phosphatase At1g05000 13 174 - -
Cmu03g1637 261 Pfam Tyrosine phosphatase family 14 174 IPR004861 -
Cmu03g1637 261 CDD PFA-DSP_Siw14 19 171 - -
Cmu03g1637 261 Gene3D Protein tyrosine phosphatase superfamily 13 174 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1637 K18045 - - csv:101211082 323.168
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1637 Cmu-Chr3:19133120 Cmu09g1064 Cmu-Chr9:10864755 2.30E-53 dispersed
Cmu03g1637 Cmu-Chr3:19133120 Cmu02g1800 Cmu-Chr2:31878440 8.80E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01026 Cam03g1077 Cec03g1081 Cco03g1073 Clacu03g1046 Cmu03g1637 Cre03g1338 Lsi06g00702 . . Cme02g00915
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu01g1654 . 118 691 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.4e-191 665.2
Cmu02g0661 . 594 1164 Protein tyrosine phosphatase (PTP) family AT3G50110 58.0 3.0e-179 625.5
Cmu10g2292 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.6e-157 552.7
Cmu08g0746 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Cmu08g0746 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Cmu06g1291 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cmu09g0990 . 86 390 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 3.1e-122 435.3
Cmu06g1874 . 16 911 Protein tyrosine phosphatase (PTP) family AT5G23720 65.2 0.0e+00 1089.3
Cmu06g0571 . 75 214 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 2.0e-42 169.1
Cmu09g1989 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Cmu05g2202 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 70.1 6.2e-116 414.1
Cmu07g0539 . 10 271 Protein tyrosine phosphatase (PTP) family AT3G10940 65.3 7.5e-98 354.0
Cmu10g2178 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 73.1 7.2e-204 706.8
Cmu02g1800 . 93 294 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 1.8e-74 276.2
Cmu09g1064 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.0e-73 272.7
Cmu10g1085 . 69 401 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 3.0e-101 365.5
Cmu11g0192 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.7e-80 296.6
Cmu11g0192 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.3e-45 179.9
Cmu10g1085 . 105 280 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.0e-43 171.0
Cmu02g1800 . 127 295 Protein tyrosine phosphatase (PTP) family AT4G03960 78.1 2.3e-77 285.4
Cmu09g1064 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.1e-70 260.8
Cmu03g1637 . 13 181 Protein tyrosine phosphatase (PTP) family AT4G03960 58.6 5.0e-56 214.5
Cmu03g1637 . 7 188 Protein tyrosine phosphatase (PTP) family AT3G02800 69.2 3.7e-70 261.5
Cmu02g1800 . 118 290 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.6e-57 218.0
Cmu07g0350 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.5e-63 239.2
Cmu10g2292 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.6e-157 552.7
Cmu02g0661 . 560 1164 Protein tyrosine phosphatase (PTP) family AT3G19420 64.3 2.6e-220 761.9
Cmu01g1654 . 116 691 Protein tyrosine phosphatase (PTP) family AT3G19420 60.8 6.6e-200 694.1
Cmu01g1654 . 118 691 Protein tyrosine phosphatase (PTP) family AT3G50110 62.2 3.4e-191 665.2
Cmu02g0661 . 594 1164 Protein tyrosine phosphatase (PTP) family AT3G50110 58.0 3.0e-179 625.5
Cmu06g1291 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.4 0.0e+00 1088.6
Cmu08g0746 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.4 0.0e+00 1188.7
Cmu08g0746 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1120.1
Cmu02g2183 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 3.1e-69 258.8
Cmu10g1027 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.3 1.1e-110 396.7
Cmu04g0770 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.3e-286 982.2
Cmu04g0770 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.0e-258 888.6
Cmu04g0770 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 4.0e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008556 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35