Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1643 ATGACCACGCTTTATGAGACGCAGTCTTCAAATCTTCGTCGTCCGTTTTACCTCTCCAAAAATCGTCAGCAACAATGGAGGGACGGATGTTTTGGACGATGTTCCTCTGCGATGGAGTACGATTCTGGAATTCCTATGTCTGTGACGGAGGGACACTCCTCTGCCCTTACACCATCCTTGCGCGAAGATGCACTGTGGCAAATGAACTTGGGATCAGGTGAAATAATGGGATCTGGATCTTATCCCGTGCGACCTGGAGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTATGTAGATTTGGAGCTACATGTAGATTTAATCATCCACCTAATAGAGAGCTGGCTATTGCCACTGCAAGAATGAAAGGGGAGTTCCCGGAAAGAATTGGACAACCAGAATGTCAGTACTACCTGAAGACAGGAACTTGCAAGTTCGGGGCTACGTGCAAGTTTCATCATCCTAGAGACAAGGCCGGGATTGCTGGAAGAGTCGCCTTAAATATTTTAGGCTATCCACTCCGCCCGAGTGAAACTGAATGTGCTTATTATTTAAGAACTGGACAATGCAAGTTTGGAAATACATGTAAATTCCACCATCCTCAACCGACTAATATGATGGTCTCACTGCGTGGGTCTCCTATTTATCCAACCGTACAATCACCAACTCCTGGTCAGCAATCATATCCAGGAGGAAGTACAAATTGGTCAAGGGCTTCATTTATTCCTAGTCCACGATGGCAAGGCCCTTCCAGTTATGCATCTTTAATATTACCTCAGGGAGTTCTTTCTGTTCCAGGTTGGAATGCATTTAATGATCAGCTAGGATCGGTTTCATCTTCAGAAAGTCCACAACAAACGAGGGAGAATGTATTTCCTGAGAGGCCTGGCCAGCCTGAATGTCAATTTTACATGAAGACTGGAGATTGCAAGTTTGGTGCCGTTTGTCGATTTCATCATCCCAGAGAAAGAGTACTTCCTGCTCCAGATTGTGTCTTGAGTCCAATAGGCCTTCCATTACGTCCGGGAGAACCTTTGTGCATCTTTTATTCTCGCTATGGGATCTGTAAGTTCGGTCCAAGCTGCAAGTTTGATCACCCTATGGGAATCTTCACATACAATCTCTCTGCAGCATCATCAGCCAATGCCCCAGTTCAGCATTTGTTTGGGACGTCTTCGGGAACAACTGCACTGAACCTATCATCTGAGGGGCTAGGCGAAGCAGGATCTGCAAAGCCGAGGCGGTTATCAATCTCTGAGACTCGAGAGATACCATCTGACGATGAAAATATCAACACCGAGGGCTGA 1308 46.1 MTTLYETQSSNLRRPFYLSKNRQQQWRDGCFGRCSSAMEYDSGIPMSVTEGHSSALTPSLREDALWQMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPSETECAYYLRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSTNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNAFNDQLGSVSSSESPQQTRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVLPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAASSANAPVQHLFGTSSGTTALNLSSEGLGEAGSAKPRRLSISETREIPSDDENINTEG 435
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 19387669 19399609 + CmPI595203_03g016430.1 Cmu03g1643 412429
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1643 435 MobiDBLite consensus disorder prediction 276 292 - -
Cmu03g1643 435 FunFam CCCH type zinc finger protein 293 378 - -
Cmu03g1643 435 ProSiteProfiles Zinc finger C3H1-type profile. 341 369 IPR000571 GO:0046872(InterPro)
Cmu03g1643 435 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872(InterPro)
Cmu03g1643 435 MobiDBLite consensus disorder prediction 276 295 - -
Cmu03g1643 435 Gene3D - 284 370 - -
Cmu03g1643 435 Gene3D - 173 221 - -
Cmu03g1643 435 SUPERFAMILY CCCH zinc finger 344 368 IPR036855 GO:0046872(InterPro)
Cmu03g1643 435 SMART c3hfinal6 175 202 IPR000571 GO:0046872(InterPro)
Cmu03g1643 435 SMART c3hfinal6 295 322 IPR000571 GO:0046872(InterPro)
Cmu03g1643 435 SMART c3hfinal6 129 156 IPR000571 GO:0046872(InterPro)
Cmu03g1643 435 SMART c3hfinal6 341 368 IPR000571 GO:0046872(InterPro)
Cmu03g1643 435 SMART c3hfinal6 84 111 IPR000571 GO:0046872(InterPro)
Cmu03g1643 435 SUPERFAMILY CCCH zinc finger 89 112 IPR036855 GO:0046872(InterPro)
Cmu03g1643 435 SUPERFAMILY CCCH zinc finger 299 324 IPR036855 GO:0046872(InterPro)
Cmu03g1643 435 ProSiteProfiles Zinc finger C3H1-type profile. 175 203 IPR000571 GO:0046872(InterPro)
Cmu03g1643 435 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 178 202 IPR000571 GO:0046872(InterPro)
Cmu03g1643 435 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 111 IPR000571 GO:0046872(InterPro)
Cmu03g1643 435 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 156 IPR000571 GO:0046872(InterPro)
Cmu03g1643 435 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 368 IPR000571 GO:0046872(InterPro)
Cmu03g1643 435 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 296 322 IPR000571 GO:0046872(InterPro)
Cmu03g1643 435 Gene3D - 84 167 - -
Cmu03g1643 435 FunFam Zinc finger nuclease 2 83 160 - -
Cmu03g1643 435 SUPERFAMILY CCCH zinc finger 177 203 IPR036855 GO:0046872(InterPro)
Cmu03g1643 435 SUPERFAMILY CCCH zinc finger 133 158 IPR036855 GO:0046872(InterPro)
Cmu03g1643 435 MobiDBLite consensus disorder prediction 402 435 - -
Cmu03g1643 435 ProSiteProfiles Zinc finger C3H1-type profile. 295 323 IPR000571 GO:0046872(InterPro)
Cmu03g1643 435 PANTHER PROTEIN PHOSPHATASE RELATED 63 369 IPR050974 GO:0003729(PANTHER)
Cmu03g1643 435 ProSiteProfiles Zinc finger C3H1-type profile. 84 112 IPR000571 GO:0046872(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0946 Cmu-Chr3:4115229 Cmu03g1643 Cmu-Chr3:19387669 9.10E-24 dispersed
Cmu03g1643 Cmu-Chr3:19387669 Cmu05g0654 Cmu-Chr5:5625746 4.60E-22 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5930 PF00642 zf-CCCH 3.00E-10 CL0537 Cmu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1643 - - - 0.0