Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1677 ATGTTATTGCAGCAAAAGCTAGTTGAAGACAATGAGAGAGTAAAAATATTCACACAAGAAGAACTTGAAGAAGCAACCAATAACTATAGTGAAAGTAGAATTCTTGGTGAAGGAGGGTATGGTACAGTTTATAAAGGAATACTCCATGGTAACACCGTTGTTGCAATCAAAAGGTCAAAGCAAATCGAAGCAAATTGGATCGAACAATTCATCAATGAAGTTATTGTTCTCTCTCGAATCAACCACAAAAATATTGTCAAGCTTCTAGGTTGTTGTTTGGAGACTGAGTTTCCTTTGCTAGTTTATGAATTTGTTTCGAATGGGACGCTTTCATATCATATTCACAACAAATTAGATCATGGAGAATCACCTTGCCTTTCATGGGAAACTCGTCTGAAAATTGCTTCTGAAGTTGCTGGTGCTATATCTTACATGCATTCTATAGTTTCAACTCCCATTTTTCATAGAGATATAAAGTCCTTGAACATTCTTTTGGATGATAAGAATAGTGCAAAGGTTTCTGATTTTGGAATATCAAGATTTGTGTCATGTGATCGATCTCACCTGACCACAAAAGTGTTGGGAACAATTGGGTATATAGATCCTGAGTACTTCAAATCAAGTCAATACACTAAAAAGAGTGATGTTTATAGCTTTGGAGTGTTGATGGTAGAACTTTTAACTCGGAAGCTACCAACTTTTGCCAGAAATGATGGTGGAAACCTATTAGACTACTTCATTTCATTGGAAAGGACTAATGGACTTGTTGAAATTCTAGATGCTACATTGGTGAAGGAAGAGAGGATGGAGGTTGTTAACAATGTGGCAACACTAGCCATAAAATGTTTAAGATCAAATGGGAAAGAAAGGCCTACAATGAAGCAAGTATATTTGGAACTAGAAGGATTGAGAAAGTCTCAAAATTGTATACAAATTATTGAAGAAACTCATTCAACTACTTTTTCATTGAACTCATTTGAGATTAGTGATGACGAGCTTACTAATCCTTCATTCTTTGAGATTTTGATTCTTCCTACTAATGTCCACCCAGAAACACCTGAGAATCTAACCAAACATTCAACAACTTCTGCTCAACCAGTTGTTGATCAAACTCAGGCATATCTCAATCTTTAG 1134 35.54 MLLQQKLVEDNERVKIFTQEELEEATNNYSESRILGEGGYGTVYKGILHGNTVVAIKRSKQIEANWIEQFINEVIVLSRINHKNIVKLLGCCLETEFPLLVYEFVSNGTLSYHIHNKLDHGESPCLSWETRLKIASEVAGAISYMHSIVSTPIFHRDIKSLNILLDDKNSAKVSDFGISRFVSCDRSHLTTKVLGTIGYIDPEYFKSSQYTKKSDVYSFGVLMVELLTRKLPTFARNDGGNLLDYFISLERTNGLVEILDATLVKEERMEVVNNVATLAIKCLRSNGKERPTMKQVYLELEGLRKSQNCIQIIEETHSTTFSLNSFEISDDELTNPSFFEILILPTNVHPETPENLTKHSTTSAQPVVDQTQAYLNL 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20725726 20727245 - CmPI595203_03g016770.1 Cmu03g1677 412463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1677 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g1677 377 CDD STKc_IRAK 35 303 - -
Cmu03g1677 377 SMART serkin_6 29 303 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1677 377 Pfam Protein kinase domain 29 296 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1677 377 FunFam Wall-associated receptor kinase 2 105 322 - -
Cmu03g1677 377 ProSiteProfiles Protein kinase domain profile. 29 303 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g1677 377 ProSitePatterns Protein kinases ATP-binding region signature. 35 57 IPR017441 GO:0005524(InterPro)
Cmu03g1677 377 Gene3D Phosphorylase Kinase; domain 1 3 104 - -
Cmu03g1677 377 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 311 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Cmu03g1677 377 SUPERFAMILY Protein kinase-like (PK-like) 13 300 IPR011009 -
Cmu03g1677 377 Gene3D Transferase(Phosphotransferase) domain 1 105 325 - -
Cmu03g1677 377 FunFam Wall-associated receptor kinase 2 2 104 - -
Cmu03g1677 377 Coils Coil 8 28 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1677 Cmu-Chr3:20725726 Cmu11g1898 Cmu-Chr11:30986988 2.00E-90 dispersed
Cmu03g1676 Cmu-Chr3:20693611 Cmu03g1677 Cmu-Chr3:20725726 8.50E-45 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75412 PF00069 Pkinase 2.80E-51 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1677 - - - 0.0