Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1856 ATGTCTGAGGGAAGAAAAATGGAAGAAAAAATGGAGGAGATGATTGAGAATTATAATGTGGGATTTTGTTCAGTTGAGTCTCAGAAGGCAAATCCGGCGCCGTTTTTGACAAAAACTTATGATTTGGTGGAGGATCCTACCACTGATCACATTGTTTCTTGGGGCCAATCTCATACAACCTTTATTGTTTGGAGACCCTCTGAGTTTGCTACTCATATTCTTCCCAACTACTTCAAACACAACAATTTCTCAAGCTTTGTTAGACAACTCAACACTTATGGATTCAAGAAAATAGTAGCAGAGAGATGGGAGTTTGGGAATGAAAACTTCAAGAAAGGAGAGAGAAAATTACTATTAGAGATTCAAAGAAGAAAGTCCCATAATCACAACAACAATAATCAACAAATTCCATTCCAATTCTTTCATCTACAACAACAACACCAACTCAGCCTCTGTTACACCACCACTTCCTCCTCAGATCCCGACATCCTAGCGGCGCTGACGCACGACAACCGTCGTCTACGGCGGAGAAACTTCATGCTATTGTCAGAGTTGGCCCAAATGAAGAATCTTTACTCCGACATCATCTACTTCATCCAAAACCACGTCAAACCGCTCGATCACAAATATGGCAGCAGATCAGTTCCAAAGCTGGTTGAGTTGGACCATCCGTCGCCGCCGCTGCCAACGTCGCCCGAGATTCGATTAGAAGAGGAAAGTGGGATGGTAAAGCTTTTTGGAGTTCCTATTAGAGGGAAGAAGAGAGTGCATCCTGAAGAGAGTGAGGTTCAAATGATGAGCTCCCATGGTGGATATGATTTACACTAA 828 42.63 MSEGRKMEEKMEEMIENYNVGFCSVESQKANPAPFLTKTYDLVEDPTTDHIVSWGQSHTTFIVWRPSEFATHILPNYFKHNNFSSFVRQLNTYGFKKIVAERWEFGNENFKKGERKLLLEIQRRKSHNHNNNNQQIPFQFFHLQQQHQLSLCYTTTSSSDPDILAALTHDNRRLRRRNFMLLSELAQMKNLYSDIIYFIQNHVKPLDHKYGSRSVPKLVELDHPSPPLPTSPEIRLEEESGMVKLFGVPIRGKKRVHPEESEVQMMSSHGGYDLH 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25006086 25007681 + CmPI595203_03g018560.1 Cmu03g1856 412642

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1856 275 ProSitePatterns HSF-type DNA-binding domain signature. 74 98 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g1856 275 MobiDBLite consensus disorder prediction 256 275 - -
Cmu03g1856 275 FunFam Heat stress transcription factor B-4 27 125 - -
Cmu03g1856 275 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g1856 275 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g1856 275 PRINTS Heat shock factor (HSF) domain signature 35 58 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g1856 275 Pfam HSF-type DNA-binding 35 124 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g1856 275 Gene3D - 27 125 IPR036388 -
Cmu03g1856 275 SMART hsfneu3 31 124 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu03g1856 275 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 28 208 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cmu03g1856 275 SUPERFAMILY Winged helix DNA-binding domain 31 124 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1856 K09419 - - csv:101221373 409.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2243 Cmu-Chr1:34806466 Cmu03g1856 Cmu-Chr3:25006086 4.70E-27 dispersed
Cmu03g1856 Cmu-Chr3:25006086 Cmu08g1539 Cmu-Chr8:27237593 3.80E-54 dispersed
Cmu03g1856 Cmu-Chr3:25006086 Cmu05g2061 Cmu-Chr5:30282651 2.20E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g975 . . . . . . . . Cmo10g00922 Cmo11g00905 Cma10g00883 . . . . . Cpe18g00201 . . . . . . . . . . . . . . . . . . Lsi06g00597 . . . . . . . . . . . . . . Cma11g00891 . . . . Cpe04g00882 . . . . . . . Cla03g01198 Cam03g1190 Cec03g1299 Cco03g1271 Clacu03g1284 Cmu03g1856 . . Csa01g03238 Chy02g01549 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g0528 . 37 237 HSF AT4G17750 59.6 1.8e-62 237.3
Cmu09g0703 . 57 298 HSF AT4G17750 51.0 1.9e-59 227.3
Cmu08g1644 . 42 242 HSF AT4G17750 54.6 6.0e-58 222.2
Cmu01g0289 . 41 163 HSF AT4G17750 61.8 3.6e-39 159.8
Cmu08g1539 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cmu05g2061 . 20 118 HSF AT4G17750 69.7 2.4e-38 157.1
Cmu05g0528 . 38 242 HSF AT5G16820 57.0 4.7e-60 229.2
Cmu07g0113 . 41 262 HSF AT5G16820 51.7 3.1e-59 226.5
Cmu09g0703 . 58 270 HSF AT5G16820 54.0 5.4e-56 215.7
Cmu08g1644 . 43 253 HSF AT5G16820 51.1 4.6e-55 212.6
Cmu01g2342 . 9 191 HSF AT5G16820 50.3 5.3e-43 172.6
Cmu06g0879 . 10 176 HSF AT5G16820 51.6 5.8e-42 169.1
Cmu10g0989 . 24 515 HSF AT1G32330 54.0 1.1e-120 430.6
Cmu05g0528 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cmu09g0703 . 46 266 HSF AT1G32330 51.8 9.9e-58 221.5
Cmu07g0113 . 27 226 HSF AT1G32330 53.1 3.8e-57 219.5
Cmu08g1644 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cmu08g1539 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Cmu07g0113 . 41 262 HSF AT3G02990 52.6 2.9e-62 236.5
Cmu05g0528 . 38 241 HSF AT3G02990 57.6 2.4e-61 233.4
Cmu09g0703 . 58 281 HSF AT3G02990 52.4 1.9e-58 223.8
Cmu08g1644 . 43 242 HSF AT3G02990 51.7 5.8e-55 212.2
Cmu06g0879 . 10 172 HSF AT3G02990 50.3 3.7e-41 166.4
Cmu05g0528 . 25 287 HSF AT2G26150 52.3 3.4e-68 255.8
Cmu09g0703 . 46 265 HSF AT2G26150 54.3 5.1e-64 241.9
Cmu10g0989 . 29 243 HSF AT2G26150 58.8 1.2e-60 230.7
Cmu11g0168 . 28 247 HSF AT2G26150 51.1 9.0e-53 204.5
Cmu03g1335 . 5 156 HSF AT2G26150 52.0 3.9e-40 162.5
Cmu10g2660 . 290 546 HSF AT5G03720 57.1 1.5e-75 280.4
Cmu02g1814 . 2 189 HSF AT4G18880 52.1 1.7e-50 197.2
Cmu05g0334 . 6 462 HSF AT4G13980 50.2 2.3e-112 402.9
Cmu05g0528 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cmu08g1644 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cmu09g0703 . 46 384 HSF AT3G22830 53.4 5.2e-92 335.1
Cmu07g0113 . 16 350 HSF AT3G22830 50.9 6.6e-87 318.2
Cmu08g1644 . 31 253 HSF AT3G22830 54.1 2.1e-64 243.4
Cmu10g0989 . 12 242 HSF AT3G22830 55.7 2.3e-63 240.0
Cmu09g0703 . 45 359 HSF AT3G51910 50.9 2.0e-71 266.2
Cmu07g0113 . 26 322 HSF AT3G51910 52.5 8.3e-70 260.8
Cmu08g1644 . 31 223 HSF AT3G51910 56.0 4.9e-54 208.4
Cmu07g0113 . 27 321 HSF AT3G63350 50.3 4.4e-66 248.4
Cmu08g1644 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Cmu02g1814 . 5 140 HSF AT3G63350 57.2 4.6e-39 158.7
Cmu11g0168 . 32 248 HSF AT5G54070 51.4 2.5e-52 203.0
Cmu01g1632 . 46 337 HSF AT4G36990 51.8 2.3e-70 262.7
Cmu08g1539 . 17 115 HSF AT5G62020 67.7 1.9e-38 156.8
Cmu01g0289 . 64 385 HSF AT4G11660 51.9 8.0e-79 291.2
Cmu08g1539 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cmu01g1632 . 46 148 HSF AT4G11660 72.8 1.7e-41 167.2
Cmu03g1856 . 26 125 HSF AT4G11660 68.0 1.1e-38 157.9
Cmu10g0989 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cmu10g2324 . 14 222 HSF AT2G41690 53.6 5.4e-52 201.4
Cmu04g0415 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Cmu08g1539 . 9 372 HSF AT1G46264 52.9 2.1e-89 326.2
Cmu05g2061 . 1 238 HSF AT1G46264 63.8 2.1e-81 299.7
Cmu03g1856 . 25 206 HSF AT1G46264 51.9 2.9e-51 199.5
Cmu10g0989 . 33 138 HSF AT1G46264 73.6 3.6e-41 166.0
Cmu10g2324 . 21 118 HSF AT1G46264 68.4 7.0e-37 151.8
Cmu11g0236 . 10 181 HSF AT3G24520 65.1 2.4e-63 239.6
Cmu05g0528 . 37 237 HSF AT4G17750 59.6 1.8e-62 237.3
Cmu09g0703 . 57 298 HSF AT4G17750 51.0 1.9e-59 227.3
Cmu08g1644 . 42 242 HSF AT4G17750 54.6 6.0e-58 222.2
Cmu01g0289 . 41 163 HSF AT4G17750 61.8 3.6e-39 159.8
Cmu08g1539 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cmu05g2061 . 20 118 HSF AT4G17750 69.7 2.4e-38 157.1
Cmu05g0528 . 38 242 HSF AT5G16820 57.0 4.7e-60 229.2
Cmu07g0113 . 41 262 HSF AT5G16820 51.7 3.1e-59 226.5
Cmu09g0703 . 58 270 HSF AT5G16820 54.0 5.4e-56 215.7
Cmu08g1644 . 43 253 HSF AT5G16820 51.1 4.6e-55 212.6
Cmu01g2342 . 9 191 HSF AT5G16820 50.3 5.3e-43 172.6
Cmu06g0879 . 10 176 HSF AT5G16820 51.6 5.8e-42 169.1
Cmu10g0989 . 24 515 HSF AT1G32330 54.0 1.1e-120 430.6
Cmu05g0528 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cmu09g0703 . 46 266 HSF AT1G32330 51.8 9.9e-58 221.5
Cmu07g0113 . 27 226 HSF AT1G32330 53.1 3.8e-57 219.5
Cmu08g1644 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cmu08g1539 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Cmu07g0113 . 41 262 HSF AT3G02990 52.6 2.9e-62 236.5
Cmu05g0528 . 38 241 HSF AT3G02990 57.6 2.4e-61 233.4
Cmu09g0703 . 58 281 HSF AT3G02990 52.4 1.9e-58 223.8
Cmu08g1644 . 43 242 HSF AT3G02990 51.7 5.8e-55 212.2
Cmu06g0879 . 10 172 HSF AT3G02990 50.3 3.7e-41 166.4
Cmu05g0528 . 25 287 HSF AT2G26150 52.3 3.4e-68 255.8
Cmu09g0703 . 46 265 HSF AT2G26150 54.3 5.1e-64 241.9
Cmu10g0989 . 29 243 HSF AT2G26150 58.8 1.2e-60 230.7
Cmu11g0168 . 28 247 HSF AT2G26150 51.1 9.0e-53 204.5
Cmu03g1335 . 5 156 HSF AT2G26150 52.0 3.9e-40 162.5
Cmu10g2660 . 290 546 HSF AT5G03720 57.1 1.5e-75 280.4
Cmu02g1814 . 2 189 HSF AT4G18880 52.1 1.7e-50 197.2
Cmu05g0334 . 6 462 HSF AT4G13980 50.2 2.3e-112 402.9
Cmu05g0528 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cmu08g1644 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cmu09g0703 . 46 384 HSF AT3G22830 53.4 5.2e-92 335.1
Cmu07g0113 . 16 350 HSF AT3G22830 50.9 6.6e-87 318.2
Cmu08g1644 . 31 253 HSF AT3G22830 54.1 2.1e-64 243.4
Cmu10g0989 . 12 242 HSF AT3G22830 55.7 2.3e-63 240.0
Cmu09g0703 . 45 359 HSF AT3G51910 50.9 2.0e-71 266.2
Cmu07g0113 . 26 322 HSF AT3G51910 52.5 8.3e-70 260.8
Cmu08g1644 . 31 223 HSF AT3G51910 56.0 4.9e-54 208.4
Cmu07g0113 . 27 321 HSF AT3G63350 50.3 4.4e-66 248.4
Cmu08g1644 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Cmu02g1814 . 5 140 HSF AT3G63350 57.2 4.6e-39 158.7
Cmu11g0168 . 32 248 HSF AT5G54070 51.4 2.5e-52 203.0
Cmu01g1632 . 46 337 HSF AT4G36990 51.8 2.3e-70 262.7
Cmu08g1539 . 17 115 HSF AT5G62020 67.7 1.9e-38 156.8
Cmu01g0289 . 64 385 HSF AT4G11660 51.9 8.0e-79 291.2
Cmu08g1539 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cmu01g1632 . 46 148 HSF AT4G11660 72.8 1.7e-41 167.2
Cmu03g1856 . 26 125 HSF AT4G11660 68.0 1.1e-38 157.9
Cmu10g0989 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cmu10g2324 . 14 222 HSF AT2G41690 53.6 5.4e-52 201.4
Cmu04g0415 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Cmu08g1539 . 9 372 HSF AT1G46264 52.9 2.1e-89 326.2
Cmu05g2061 . 1 238 HSF AT1G46264 63.8 2.1e-81 299.7
Cmu03g1856 . 25 206 HSF AT1G46264 51.9 2.9e-51 199.5
Cmu10g0989 . 33 138 HSF AT1G46264 73.6 3.6e-41 166.0
Cmu10g2324 . 21 118 HSF AT1G46264 68.4 7.0e-37 151.8
Cmu11g0236 . 10 181 HSF AT3G24520 65.1 2.4e-63 239.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012657 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5931 PF00447 HSF_DNA-bind 1.00E-31 CL0123 Cmu TF