Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1906 ATGTTTCAAGACGAAGGCACATCCTCCATCACTTCCTCCCCTCTCCAGTTCTTCACAATGATGTCTCTTTCCCCTAAATTGGGTTCTCCATATCCATGGCTTAGAGAGCTTAAATCTGAGGAGAGGGGCTTGTATCTAATCCATTTGTTGCTTACTTGTGCAAATCATGTGGCTGTTGGTAGCCTTGACAGTGCTAATCTTGCCCTTGATCAAATATCTCATCTTGCTTCTGCAGATGGTGATACAATGCAGCGAATTGCAGCATATTTCGCCGAGGCTCTCGCGGATAGGATCCTCAAGACTTGGCCTGGTCTTTACAAGGCATTCAACTCTACTAAGATACCAATGGTTTCAGAGAAGATTCTTGTTAAGAAACTGTTCTTTGAAATGTTTCCATTCCTCAAGGTGGCTTTTGTGCTTACTAATCAAGCTATTGTTGAAGCCATGGAGGGAGAAAAGATGATTCATATAATTGATCTCAATGCTAATGAAACTGCTCAGTGGCTTGCTCTTTTGCAAGTTTTGAGTGTGAGGCCTGAAGGACCTCCACATTTGAGAATCACTGGAGTTCATCCACAGAAAGAGGTTCTGGATCAAATGGCTCGTAGGCTGACCGATGAAGCCGAGAAATTGGACATCCCGTTTCAATTCAATTCGGTTATCAGCCGACTAGACGATCTTGATATGGAAAAGCTTCGTGTGAAAACTGGGGAGGCTTTGGCCATCAATTCAGTTCTTCAGTTGCACACCCTTTTGGGCTGTGATAATGAAGTCTTGCAAAAGCCATCTCCATCAGCAGCCAAGAGTGCAAATGGAGTTCAATACTCGAGATACCCACATCTGAACCAAACCACCTTGAGTGACTTACTCGACAAGGATTTGGTTAACGGATGTAGTCCAAGTCCCGATTCAGTTTCCTCATCAGCATTATCTCAGGCTAATGTGACGAAGATCGACAGCTTTTTGAATGGATTGTGGAGTTTGACGCCAAAGGTGATGGTCGTAACAGAACAAGATTCTAACCATAATGGTTCAACACTTATGGAGAGATTACTGGAGGCTCTCCACACATATGCAGCTATCTTTGATTGTTTGGAGTCTAACATGTCAAGAACATCCCTGGAGAGGTTGAAGTTGGAAAAGATGCTATTTGGAGAAGAGATTAAGAACATCATAGCTTGTGAGGGAGCTGAAAGGAAGGAACGACATGAAAAACAAGAGAAATGGAGTCAACGGTTCGATGTTGCGGGGTTCAGGCATGTGTCTTTGAGTTATTATGGCATGATGCAGGCTCGGAGCTTGCTGCAGGGGTATGGTTGTGATGGTTATAGGATGAAGGAAGAGAATGGCTGTGTGATGATTTGTTGGCAAGATCGTCCATTGTTCTCGGTTTCGGCTTGGAGATGTTGTAAGTAG 1416 43.86 MFQDEGTSSITSSPLQFFTMMSLSPKLGSPYPWLRELKSEERGLYLIHLLLTCANHVAVGSLDSANLALDQISHLASADGDTMQRIAAYFAEALADRILKTWPGLYKAFNSTKIPMVSEKILVKKLFFEMFPFLKVAFVLTNQAIVEAMEGEKMIHIIDLNANETAQWLALLQVLSVRPEGPPHLRITGVHPQKEVLDQMARRLTDEAEKLDIPFQFNSVISRLDDLDMEKLRVKTGEALAINSVLQLHTLLGCDNEVLQKPSPSAAKSANGVQYSRYPHLNQTTLSDLLDKDLVNGCSPSPDSVSSSALSQANVTKIDSFLNGLWSLTPKVMVVTEQDSNHNGSTLMERLLEALHTYAAIFDCLESNMSRTSLERLKLEKMLFGEEIKNIIACEGAERKERHEKQEKWSQRFDVAGFRHVSLSYYGMMQARSLLQGYGCDGYRMKEENGCVMICWQDRPLFSVSAWRCCK 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26282693 26284108 + CmPI595203_03g019060.1 Cmu03g1906 412692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1906 471 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 41 467 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009739(PANTHER)|GO:0043565(PANTHER)
Cmu03g1906 471 ProSiteProfiles GRAS family profile. 37 468 IPR005202 -
Cmu03g1906 471 Pfam GRAS domain family 46 468 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1906 Cmu-Chr3:26282693 Cmu05g2138 Cmu-Chr5:30842798 1.50E-146 dispersed
Cmu03g1906 Cmu-Chr3:26282693 Cmu01g1880 Cmu-Chr1:32360723 1.60E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5933 PF03514 GRAS 5.30E-142 CL0063 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1906 - - - 0.0