Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1930 ATGCAGTCAAAGTCTGAAACCAATAATCAGCTTGATCCAAATGGTGCTCCATCCACGAGTATCTATTATGAACCCTGGTGGCGTGGTATGGGGTACAATACTTTTCCGTTACCTGTGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCCTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAGTCTGTGTCTAATAATGATGTAAATGATGAAGAAGATGATGTTTCGAAAGAAGCGCAAGCCACTGGATCTCCACATTCTGTGGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTTTCGTCCACTTTGCCAGCTATGCACGGTGAATGTGGGATGCAGTCTACACATCTTGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCCTATCAGGATCCATATTATGGAGGAATGATGGCTTTCTATGGTCATCAGCCCTTGGGCTATCCTATGGTCGGAGGACCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTCGTGAATGCAAAGCAATACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGCCATACCTTCATGAGTCTAGACATCAGCATGCCATAAGAAGGTCAAGGAGTAGTGGAGGACGTTTTGCTAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATAAAGTAAACGAGAGTGGTTACCGCCTAAATGACGGTTCTGAACAGCAGAACGGAAGCTCCTTGACAAACAAGGCCTCAGAATAG 810 45.31 MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSPEFPNGGSESNDGQSVSNNDVNDEEDDVSKEAQATGSPHSVGSYRQDAQKMQHVSSTLPAMHGECGMQSTHLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRSRSSGGRFAKKNEADGKEMHSDKVNESGYRLNDGSEQQNGSSLTNKASE 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26745035 26747299 - CmPI595203_03g019300.1 Cmu03g1930 412716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1930 269 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cmu03g1930 269 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 16 259 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cmu03g1930 269 MobiDBLite consensus disorder prediction 82 98 - -
Cmu03g1930 269 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g1930 269 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g1930 269 MobiDBLite consensus disorder prediction 203 269 - -
Cmu03g1930 269 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g1930 269 Gene3D - 171 233 - -
Cmu03g1930 269 MobiDBLite consensus disorder prediction 1 17 - -
Cmu03g1930 269 MobiDBLite consensus disorder prediction 206 225 - -
Cmu03g1930 269 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g1930 269 MobiDBLite consensus disorder prediction 1 22 - -
Cmu03g1930 269 MobiDBLite consensus disorder prediction 250 269 - -
Cmu03g1930 269 SMART cbf3 170 231 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g1930 269 MobiDBLite consensus disorder prediction 226 249 - -
Cmu03g1930 269 MobiDBLite consensus disorder prediction 37 98 - -
Cmu03g1930 269 MobiDBLite consensus disorder prediction 39 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1930 Cmu-Chr3:26745035 Cmu11g0155 Cmu-Chr11:2043783 1.20E-23 dispersed
Cmu02g2297 Cmu-Chr2:36524294 Cmu03g1930 Cmu-Chr3:26745035 2.40E-73 wgd
Cmu03g1930 Cmu-Chr3:26745035 Cmu09g0394 Cmu-Chr9:3788705 6.30E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5935 PF02045 CBFB_NFYA 1.70E-25 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1930 K08064 - csv:101212860 496.508