Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1950 ATGGAAGTTGATGATATAAGGTGTGATAATATTGCAGAGAAAGATGTTAGTGATGAAGAAATTGATGCAGAGGATCTGGAGAGGCGTATGTGGAAAGATAGGATCAAGCTTAAAAGGATTAAGGAAAGAGAGAAAATTGCTGCACAACAGGCTGCGGAGAAGCAGAAACCGAAGCAGACATCTGACCAGGCTCGAAGGAAGAAGATGTCTAGAGCTCAAGATGGGATTCTCAAATATATGCTGAAACTGATGGAAGTATGCAAAGCTCGGGGATTCGTATATGGCATTATACCTGAGAAGGGGAAACCAGTTAGTGGTGCTTCTGACAACATCCGAGCTTGGTGGAAAGAAAAAGTTAAATTTGACAAGAATGGACCAGCTGCTATAGCCAAGTATGAAGCAGAATGTCTTGCCAAAGGAGAGGCAGATGGAAATGGAAACGGTAACTCCCAGAGCGTTCTTCAAGACCTTCAGGATGCAACGCTCGGGTCTCTTTTGTCTTCTTTGATGCAACATTGCGATCCCCCTCAGCGGAAGTACCCGTTAGAAAAGGGGGTTCCTCCACCCTGGTGGCCCTCTGGGAATGAAGATTGGTGGGTAAAGCTTGGACTATCCCATGGCAGTAGTCCTCCTTATAAGAAGCCACACGATTTGAAGAAGATGTGGAAAGTGGGGGTCTTAACAGCTGTAATAAAGCATATGTCACCTGATATTGCAAAGATAAGGAGGCACGTACGGCAGTCAAAGTGCTTACAAGACAAGATGACTGCAAAGGAGAGTGCAATTTGGTTAGGAGTTTTAAGCCGAGAGGAATCTCTAATTCGGCAACCGAGCAGTGATAATGGAGCTTCTGGAATAACAGAGACACCAGTAGGTGGTCGTGGTGAAAAGCAAGCTGCAGTAAGCAGTGAAAGTGACTATGATGTTGACCTTGCTGATGATGGTGTCGGGTCAGTTTCTTCTAAAGAGGACAGAAGACCACGATCCATGGATGTGGAGCCACCCAGTAATCTACCCAATAATGCTCCTCAACCTGCTGAAGGAAAGGAGCAAGGTGAAAAACAAAGGAGAAAAAGGCATCGTGGGGGCAGGACAAAGCCTATCGATCAAACACTGGCTCCCTCTCGAAACGAAGAAGAACCATGTGTCGAACCAAGAACTACTCAGCTCGATATTAACCATTCTAATGTACCATTAGATAGATTTGAAATTCCAGGAAACCAACAACAAAAGGATACTGTCACAGCTTTGAGGCCACTCGAGAAGGATTTGGATGTCCAATCAGAAGTACCAGCTCCTCCGTTCAACATGCTCTCGGTGCCATCCTCTGATAATATCAATATAATTTCCACTCAGAGCATGTATGTTGATGGAAGGCCTTTGTTGTATCCTGTAATGCAGAATCCTGAGGTGCAACATGAAAGTGCTTACAATATTTATAATCCATCGGTCGATTATAGATCCAATTTTGATATGCAGCATTCTCAATTTGTTAATGAGCCTCAAATGAGATTGGAGGAAGGATTACATATTCCGACACAACATAGAAACGATGGGACGGTAGGAGAAGAATTCAACTATGTAAAAGAAACGTTCAACACAGAACAAGATCGGCCTGTTGATGCACAGTTTGGATCACCAATCAACAGTCTATCATTAGATTATGGAGCATTTAACAGTCCATTCCATCTCGGGATCGACAGTTCAACCTCATTCGATGACTTGTTGGTTGATGACGATTTGATTCAATACTTCGGAGCATAA 1764 43.65 MEVDDIRCDNIAEKDVSDEEIDAEDLERRMWKDRIKLKRIKEREKIAAQQAAEKQKPKQTSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAKGEADGNGNGNSQSVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWVKLGLSHGSSPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREESLIRQPSSDNGASGITETPVGGRGEKQAAVSSESDYDVDLADDGVGSVSSKEDRRPRSMDVEPPSNLPNNAPQPAEGKEQGEKQRRKRHRGGRTKPIDQTLAPSRNEEEPCVEPRTTQLDINHSNVPLDRFEIPGNQQQKDTVTALRPLEKDLDVQSEVPAPPFNMLSVPSSDNINIISTQSMYVDGRPLLYPVMQNPEVQHESAYNIYNPSVDYRSNFDMQHSQFVNEPQMRLEEGLHIPTQHRNDGTVGEEFNYVKETFNTEQDRPVDAQFGSPINSLSLDYGAFNSPFHLGIDSSTSFDDLLVDDDLIQYFGA 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27152932 27154695 - CmPI595203_03g019500.1 Cmu03g1950 412736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1950 587 MobiDBLite consensus disorder prediction 317 331 - -
Cmu03g1950 587 MobiDBLite consensus disorder prediction 46 69 - -
Cmu03g1950 587 FunFam Ethylene insensitive 3-like 1 58 136 - -
Cmu03g1950 587 SUPERFAMILY DNA-binding domain of EIN3-like 152 274 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cmu03g1950 587 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 1 550 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
Cmu03g1950 587 FunFam Ethylene insensitive 3-like 1 145 281 - -
Cmu03g1950 587 MobiDBLite consensus disorder prediction 273 386 - -
Cmu03g1950 587 Coils Coil 23 43 - -
Cmu03g1950 587 Pfam Ethylene insensitive 3, DNA-binding domain 24 271 IPR047091 GO:0003700(InterPro)
Cmu03g1950 587 Gene3D - 58 136 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cmu03g1950 587 Gene3D - 144 282 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1950 Cmu-Chr3:27152932 Cmu08g0805 Cmu-Chr8:20333249 2.60E-105 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5937 PF04873 EIN3 4.00E-127 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1950 K14514 - csv:101210347 1058.51