Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1956 ATGGTGAACCCACCACTTCCCCTCCAGCAAATATCCCCAAAAATGGCTGCCACGAACACCAATGTCGCCGGCGACGTCGACGATCGCGTCTTGGCCACCGCTCAGCAGATCGTCAAAAGCTTCAATACTCCTAAAGAGGTCCGTGAGGATATGCTCTTGATTCTCTCTAGTTTTGATAATCGTCTTTCCAGTATTAGTAGTATGATCCATAGTGATGACTCCAAGACTAAGAACGATAGGTTGGACGCCGCCGAGAAGGTGATTCTACGTTGGGACACAAATTCCGATGTGTCGATTCGGTCGTTTAATTGGGAGGATTCGCGGGACGAGGCGGCTGAATATTTATCGGCGGTGGATGATATACTCCAGTTAATGGAAGAGCTTTCAATTGGGTCTGAATCGACCGACATCGTAGACCGAGCAGAAAACGTGATCCAAATGGCGATGTGTCGGCTCGAGAGCGAATTTCGCCATATCTTGATCCAGAGCACAGTCCCTCTCGACGCCGAGCGGCTTTACGGCTCGATCCGAAGAGTTCACCTCACGTTTGCGTCACATTACAGTGAAATTGACGACGAATTCGAGAGTTTCACCGAGGAAAGTTGCAGTTCCGGGCGATTTCATGAGCGAGGTGCGACAATTGGAGAAGATTCTTGGGTTGATTTGATCCATCCTGATGCGTCTGTTGATCTTTCAGAGATTGCGGACCGTATGATTCGCTCTGGCTATGAAAAGGAGTGTGTTCAAGTCTATAGCACTGTTCGTCGTGATGCTTTGGACGAGTGCTTGGCGATTCTTGGCGTCGAACGACTCAGCATTGAGGAGGTTCAGAAAAGTGATTGGAAATTCTTGGATGAGAAGATGAAGAAATGGATTCAGGCAGTCAAAATTACAGTTCGGTTGATTTTGGAAGGTGAGAAGAGGCTCTGTGATCAGATTTTCAATGGCGCTAATGAATCCAAGGAGATTTGTTTTAACGAAACAGCAAAAGGGTGTGTAATGCAGCTATTGAATTTTGGTGAGGCAGTGGCTATTGGGAAGAGATCACCTGAGAAGCTGTTCCGAATCTTGGATATGTACGACGCTTTGGCTGGGGTTTTGCCCAACTTAGAAGCCATGGTTTCTGATGGATTTTTGATCAGTGAAGCACATGGAGTATTGTCGGGACTAGGAGAAGCAGCCACAGGGACATTTGCCGAGTTTGAGAATGCCATTAAAAGCGAAAATTCAAAGAAAGCAATGCAAAACGCCGAGATTCACCCGCTTATTCGATATGTAATGAATTATGTTAGATTGCTGGTTGATTACAGTAAGACAATGAACTCTCTTTTAGAAGACGAGGAAGTGCAAGACTTGCCAAATGAGAGGGATAATGACGATAATCTGCAGTTGGAAAGTACATCACCTTTAGCTCGTAGATTATTAACGCTGTTATCGTCTTTGGAGTCCAATCTTATGGAAAAATCCAAGTTGTATGAGGATGTTGCTATGCAGTTTATATTTCTAATGAACAATATACTGTACATAGTGAAAAAGGTGAAAGATTCTGAGCTTGCCCAGCTGCTTGGTGATAACTGGCTTCGTAGGCATAGTGGCCAAATTCGCCAATATGAAACGAGTTACCTTAGAGCTTCTTGGAGCAAAGTTTTGTCTTGCTTAAAGGATGAAGGTATTGGTGGGAGCACAAGCAATGCCTCCAAGGTAGCTTTGAAGGAAAAGTTCAAGAATTTCAATGCAGGTTTTGAGGAAATCTGCAGGGTTCAAACAGCTTGGAAGGTATCAGATGCTCAACTACGCGATGAGCTGATAATATCCGTTTCGGAGAAGGTGATTCCAGCGTATCGCTCCTTCTTAGGAAGGTTTAGAAATCAGTTAGAGAGTGGAAGGAATTCCGGGAAGTACATAAAGTACACGCCAGAGGATTTAGAGAACTCTCTATCAGATTTGTTTGAAGGATCAGCTGCTGTATTACATCACTTGCGAAGAAAGGGTACTTGA 1998 44.64 MVNPPLPLQQISPKMAATNTNVAGDVDDRVLATAQQIVKSFNTPKEVREDMLLILSSFDNRLSSISSMIHSDDSKTKNDRLDAAEKVILRWDTNSDVSIRSFNWEDSRDEAAEYLSAVDDILQLMEELSIGSESTDIVDRAENVIQMAMCRLESEFRHILIQSTVPLDAERLYGSIRRVHLTFASHYSEIDDEFESFTEESCSSGRFHERGATIGEDSWVDLIHPDASVDLSEIADRMIRSGYEKECVQVYSTVRRDALDECLAILGVERLSIEEVQKSDWKFLDEKMKKWIQAVKITVRLILEGEKRLCDQIFNGANESKEICFNETAKGCVMQLLNFGEAVAIGKRSPEKLFRILDMYDALAGVLPNLEAMVSDGFLISEAHGVLSGLGEAATGTFAEFENAIKSENSKKAMQNAEIHPLIRYVMNYVRLLVDYSKTMNSLLEDEEVQDLPNERDNDDNLQLESTSPLARRLLTLLSSLESNLMEKSKLYEDVAMQFIFLMNNILYIVKKVKDSELAQLLGDNWLRRHSGQIRQYETSYLRASWSKVLSCLKDEGIGGSTSNASKVALKEKFKNFNAGFEEICRVQTAWKVSDAQLRDELIISVSEKVIPAYRSFLGRFRNQLESGRNSGKYIKYTPEDLENSLSDLFEGSAAVLHHLRRKGT 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27294720 27296717 - CmPI595203_03g019560.1 Cmu03g1956 412742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1956 665 FunFam Exocyst subunit Exo70 family protein 97 658 - -
Cmu03g1956 665 SUPERFAMILY Cullin repeat-like 79 651 IPR016159 -
Cmu03g1956 665 Pfam Exocyst complex component Exo70 N-terminal 81 162 - -
Cmu03g1956 665 Gene3D Exocyst complex component Exo70 87 657 - -
Cmu03g1956 665 PANTHER EXOCYST COMPLEX PROTEIN EXO70 67 653 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cmu03g1956 665 Pfam Exo70 exocyst complex subunit C-terminal 289 648 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1956 K07195 - - csv:101205970 1118.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0672 Cmu-Chr3:860409 Cmu03g1956 Cmu-Chr3:27294720 4.00E-107 dispersed
Cmu03g0976 Cmu-Chr3:4359063 Cmu03g1956 Cmu-Chr3:27294720 1.90E-240 dispersed
Cmu03g1956 Cmu-Chr3:27294720 Cmu07g1605 Cmu-Chr7:31202037 1.60E-122 dispersed
Cmu03g1956 Cmu-Chr3:27294720 Cmu02g2057 Cmu-Chr2:34226190 2.30E-89 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g2244 . 12 653 EXO70 exocyst subunit family AT5G03540 76.3 1.3e-286 982.2
Cmu01g1457 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 5.8e-266 913.7
Cmu01g1457 . 1 638 EXO70 exocyst subunit family AT5G52340 80.4 1.7e-299 1025.0
Cmu05g2244 . 14 653 EXO70 exocyst subunit family AT5G52340 74.7 6.0e-273 936.8
Cmu01g1457 . 145 631 EXO70 exocyst subunit family AT5G52350 63.9 1.3e-176 616.7
Cmu05g2244 . 149 653 EXO70 exocyst subunit family AT5G52350 59.5 7.8e-166 580.9
Cmu03g0672 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 3.7e-246 847.8
Cmu03g0672 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 1.0e-173 607.1
Cmu07g1515 . 60 673 EXO70 exocyst subunit family AT5G13150 53.5 4.6e-175 611.7
Cmu01g0835 . 115 726 EXO70 exocyst subunit family AT5G13990 54.5 6.0e-189 657.9
Cmu07g1430 . 9 609 EXO70 exocyst subunit family AT1G72470 65.2 4.7e-217 751.1
Cmu07g1430 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 1.4e-208 723.0
Cmu07g1430 . 9 608 EXO70 exocyst subunit family AT3G14090 64.4 8.5e-219 756.9
Cmu03g1956 . 27 664 EXO70 exocyst subunit family AT5G50380 61.5 8.7e-225 776.9
Cmu03g0976 . 18 630 EXO70 exocyst subunit family AT5G50380 60.9 1.9e-211 732.6
Cmu08g1197 . 11 682 EXO70 exocyst subunit family AT4G31540 73.6 1.4e-294 1008.8
Cmu10g2801 . 35 630 EXO70 exocyst subunit family AT3G09520 55.9 1.9e-178 622.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74