Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1956 ATGGTGAACCCACCACTTCCCCTCCAGCAAATATCCCCAAAAATGGCTGCCACGAACACCAATGTCGCCGGCGACGTCGACGATCGCGTCTTGGCCACCGCTCAGCAGATCGTCAAAAGCTTCAATACTCCTAAAGAGGTCCGTGAGGATATGCTCTTGATTCTCTCTAGTTTTGATAATCGTCTTTCCAGTATTAGTAGTATGATCCATAGTGATGACTCCAAGACTAAGAACGATAGGTTGGACGCCGCCGAGAAGGTGATTCTACGTTGGGACACAAATTCCGATGTGTCGATTCGGTCGTTTAATTGGGAGGATTCGCGGGACGAGGCGGCTGAATATTTATCGGCGGTGGATGATATACTCCAGTTAATGGAAGAGCTTTCAATTGGGTCTGAATCGACCGACATCGTAGACCGAGCAGAAAACGTGATCCAAATGGCGATGTGTCGGCTCGAGAGCGAATTTCGCCATATCTTGATCCAGAGCACAGTCCCTCTCGACGCCGAGCGGCTTTACGGCTCGATCCGAAGAGTTCACCTCACGTTTGCGTCACATTACAGTGAAATTGACGACGAATTCGAGAGTTTCACCGAGGAAAGTTGCAGTTCCGGGCGATTTCATGAGCGAGGTGCGACAATTGGAGAAGATTCTTGGGTTGATTTGATCCATCCTGATGCGTCTGTTGATCTTTCAGAGATTGCGGACCGTATGATTCGCTCTGGCTATGAAAAGGAGTGTGTTCAAGTCTATAGCACTGTTCGTCGTGATGCTTTGGACGAGTGCTTGGCGATTCTTGGCGTCGAACGACTCAGCATTGAGGAGGTTCAGAAAAGTGATTGGAAATTCTTGGATGAGAAGATGAAGAAATGGATTCAGGCAGTCAAAATTACAGTTCGGTTGATTTTGGAAGGTGAGAAGAGGCTCTGTGATCAGATTTTCAATGGCGCTAATGAATCCAAGGAGATTTGTTTTAACGAAACAGCAAAAGGGTGTGTAATGCAGCTATTGAATTTTGGTGAGGCAGTGGCTATTGGGAAGAGATCACCTGAGAAGCTGTTCCGAATCTTGGATATGTACGACGCTTTGGCTGGGGTTTTGCCCAACTTAGAAGCCATGGTTTCTGATGGATTTTTGATCAGTGAAGCACATGGAGTATTGTCGGGACTAGGAGAAGCAGCCACAGGGACATTTGCCGAGTTTGAGAATGCCATTAAAAGCGAAAATTCAAAGAAAGCAATGCAAAACGCCGAGATTCACCCGCTTATTCGATATGTAATGAATTATGTTAGATTGCTGGTTGATTACAGTAAGACAATGAACTCTCTTTTAGAAGACGAGGAAGTGCAAGACTTGCCAAATGAGAGGGATAATGACGATAATCTGCAGTTGGAAAGTACATCACCTTTAGCTCGTAGATTATTAACGCTGTTATCGTCTTTGGAGTCCAATCTTATGGAAAAATCCAAGTTGTATGAGGATGTTGCTATGCAGTTTATATTTCTAATGAACAATATACTGTACATAGTGAAAAAGGTGAAAGATTCTGAGCTTGCCCAGCTGCTTGGTGATAACTGGCTTCGTAGGCATAGTGGCCAAATTCGCCAATATGAAACGAGTTACCTTAGAGCTTCTTGGAGCAAAGTTTTGTCTTGCTTAAAGGATGAAGGTATTGGTGGGAGCACAAGCAATGCCTCCAAGGTAGCTTTGAAGGAAAAGTTCAAGAATTTCAATGCAGGTTTTGAGGAAATCTGCAGGGTTCAAACAGCTTGGAAGGTATCAGATGCTCAACTACGCGATGAGCTGATAATATCCGTTTCGGAGAAGGTGATTCCAGCGTATCGCTCCTTCTTAGGAAGGTTTAGAAATCAGTTAGAGAGTGGAAGGAATTCCGGGAAGTACATAAAGTACACGCCAGAGGATTTAGAGAACTCTCTATCAGATTTGTTTGAAGGATCAGCTGCTGTATTACATCACTTGCGAAGAAAGGGTACTTGA 1998 44.64 MVNPPLPLQQISPKMAATNTNVAGDVDDRVLATAQQIVKSFNTPKEVREDMLLILSSFDNRLSSISSMIHSDDSKTKNDRLDAAEKVILRWDTNSDVSIRSFNWEDSRDEAAEYLSAVDDILQLMEELSIGSESTDIVDRAENVIQMAMCRLESEFRHILIQSTVPLDAERLYGSIRRVHLTFASHYSEIDDEFESFTEESCSSGRFHERGATIGEDSWVDLIHPDASVDLSEIADRMIRSGYEKECVQVYSTVRRDALDECLAILGVERLSIEEVQKSDWKFLDEKMKKWIQAVKITVRLILEGEKRLCDQIFNGANESKEICFNETAKGCVMQLLNFGEAVAIGKRSPEKLFRILDMYDALAGVLPNLEAMVSDGFLISEAHGVLSGLGEAATGTFAEFENAIKSENSKKAMQNAEIHPLIRYVMNYVRLLVDYSKTMNSLLEDEEVQDLPNERDNDDNLQLESTSPLARRLLTLLSSLESNLMEKSKLYEDVAMQFIFLMNNILYIVKKVKDSELAQLLGDNWLRRHSGQIRQYETSYLRASWSKVLSCLKDEGIGGSTSNASKVALKEKFKNFNAGFEEICRVQTAWKVSDAQLRDELIISVSEKVIPAYRSFLGRFRNQLESGRNSGKYIKYTPEDLENSLSDLFEGSAAVLHHLRRKGT 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27294720 27296717 - CmPI595203_03g019560.1 Cmu03g1956 412742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1956 665 FunFam Exocyst subunit Exo70 family protein 97 658 - -
Cmu03g1956 665 SUPERFAMILY Cullin repeat-like 79 651 IPR016159 -
Cmu03g1956 665 Pfam Exocyst complex component Exo70 N-terminal 81 162 - -
Cmu03g1956 665 Gene3D Exocyst complex component Exo70 87 657 - -
Cmu03g1956 665 PANTHER EXOCYST COMPLEX PROTEIN EXO70 67 653 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cmu03g1956 665 Pfam Exo70 exocyst complex subunit C-terminal 289 648 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0672 Cmu-Chr3:860409 Cmu03g1956 Cmu-Chr3:27294720 4.00E-107 dispersed
Cmu03g0976 Cmu-Chr3:4359063 Cmu03g1956 Cmu-Chr3:27294720 1.90E-240 dispersed
Cmu03g1956 Cmu-Chr3:27294720 Cmu07g1605 Cmu-Chr7:31202037 1.60E-122 dispersed
Cmu03g1956 Cmu-Chr3:27294720 Cmu02g2057 Cmu-Chr2:34226190 2.30E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1956 K07195 - csv:101205970 1118.22