Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1980 ATGGAAGACGAAGCCTCCTCCAGTTTCCTTTCCCATATCAAGACTCCTATTCTAACAGACGAAGTTTCAGATTCTAATTTCACATATTATGCCATACCTGAAGCTAAGCGGCCGAGATTGGACAACGATCTTAATGATGTTGTCGCCGTCGGGAAATTCAAAGGCGTTGTTCCGCAACAGAATGGCCGTTGGGGAGCGCAGATCTACGCGAATCACCAGAGGATCTGGCTCGGTACCTTCAAAACAGAGAAAGACGCTGCCATGGCTTACGACAGCGCCGCTATCAAGCTTCGCACCAGAGATTCTCACCGGAATTTCCCCTGGACTCGCCGAACAATCGAGGAGCCAAATTTTCAAATCAAATTCTCCACAGACGCCGTTCTGAGTATGATCAAAGACGGGTCATATTACTCGAAATTTTCCGCTTATTTACGAACGCGATCGCAAATTCACGACTCGAATTTACAGAATCCTCAAAATTTCGACAATACCGATGGCGATAGCCTTTTCTCTTGCAGTCATCTATTCCAGAAGGAATTAACACCGAGCGATGTCGGCAAGTTGAATCGACTCGTAATCCCTAAAAAATACGCAGTGAAACACTTTCCATACATCAGCGAAAGCGCAGAGGAGAACGGCGATGACATTGAAATCGTCTTCTACGATACGTCGATGAAGACGTGGAAGTTCCGATATTGTTACTGGAGGAGCAGCCAGAGCTTCGTCTTTACCAGAGGCTGGAATCGCTTCGTGAAGGAGAAGAAACTGAAGGCAAACGACATTATCACGTTTTACACATACGAGAGCTGTGGAAGAGACGAAAATGGCGGAACATTGAACTTCATAGACGTAATCTATAAGAAATCGGAGGATGATCAGAGCGACAGTAGTTGCTTAGCGGCGGAGAAAGAGAGTGTTAAGAATGAGCAAATATTGGAGAGCGAATTAGGGCAAAATCAGGGGAAGGGTTGTGAGAAGGAGAAGAACAAGAAGAAGAAGGAGATTTTAAGCATTGAATTGAACCCTAATGATAAAAATGTTGGGGGAAAGCGTATTAGGCTATTTGGAGTGCATATTGATTGA 1083 44.88 MEDEASSSFLSHIKTPILTDEVSDSNFTYYAIPEAKRPRLDNDLNDVVAVGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKTEKDAAMAYDSAAIKLRTRDSHRNFPWTRRTIEEPNFQIKFSTDAVLSMIKDGSYYSKFSAYLRTRSQIHDSNLQNPQNFDNTDGDSLFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISESAEENGDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGRDENGGTLNFIDVIYKKSEDDQSDSSCLAAEKESVKNEQILESELGQNQGKGCEKEKNKKKKEILSIELNPNDKNVGGKRIRLFGVHID 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27778749 27779831 - CmPI595203_03g019800.1 Cmu03g1980 412766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1980 360 SUPERFAMILY DNA-binding pseudobarrel domain 174 269 IPR015300 -
Cmu03g1980 360 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g1980 360 SMART B3_2 176 285 IPR003340 GO:0003677(InterPro)
Cmu03g1980 360 CDD B3_DNA 174 281 IPR003340 GO:0003677(InterPro)
Cmu03g1980 360 CDD AP2 52 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g1980 360 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 52 359 IPR044800 GO:0003700(InterPro)
Cmu03g1980 360 Gene3D - 164 296 IPR015300 -
Cmu03g1980 360 SMART rav1_2 52 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g1980 360 Gene3D AP2/ERF domain 52 108 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g1980 360 FunFam AP2 domain-containing protein RAP2.8 51 108 - -
Cmu03g1980 360 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677(InterPro)
Cmu03g1980 360 Pfam B3 DNA binding domain 176 266 IPR003340 GO:0003677(InterPro)
Cmu03g1980 360 ProSiteProfiles B3 DNA-binding domain profile. 176 289 IPR003340 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1980 K09287 - - csv:101219913 645.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1980 Cmu-Chr3:27778749 Cmu06g1286 Cmu-Chr6:24025250 1.90E-82 dispersed
Cmu03g1980 Cmu-Chr3:27778749 Cmu05g2358 Cmu-Chr5:32784659 2.70E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g127 . . Bda02g00652 Bda09g01367 Bpe01g00296 . . . . Cmo11g00834 . . . . Sed12g1834 Cpe05g00517 . Bhi02g01605 Tan09g0896 Cmetu02g0836 . . . . Cla02g02293 Cam02g2436 Cec02g2485 Cco02g2518 Clacu02g2411 Cmu02g2344 Cre02g2665 . . . . Lsi06g00470 . Chy05g00088 Cme05g00107 Blo08g00085 Blo14g00266 . . Bpe08g00254 . Bma07g00238 Bma11g00274 Sed01g3335 Cmo02g01256 Cmo20g00061 Cma02g01220 Cma20g00057 Car02g01008 Car20g00045 Cpe16g00903 Cpe04g00940 Bhi10g00367 Tan07g0693 Cmetu05g1669 . Hepe08g0088 . . Cla03g01321 Cam03g1400 Cec03g1432 Cco03g1420 Clacu03g1420 Cmu03g1980 Cre03g1653 . Csa01g03119 Chy02g01405 Cme02g00471
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g2596 . 41 156 RAV Transcription Factor Family AT2G36080 76.7 7.5e-48 187.2
Cmu06g0229 . 79 194 RAV Transcription Factor Family AT2G36080 68.9 5.5e-43 171.0
Cmu07g0816 . 67 178 RAV Transcription Factor Family AT2G36080 70.1 7.5e-40 160.6
Cmu01g0125 . 29 138 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Cmu05g2358 . 178 322 RAV Transcription Factor Family AT2G36080 54.8 3.1e-38 155.2
Cmu01g0125 . 29 144 RAV Transcription Factor Family AT2G46870 87.2 2.1e-56 216.5
Cmu06g0229 . 74 325 RAV Transcription Factor Family AT2G46870 50.2 3.6e-53 205.7
Cmu07g0816 . 70 202 RAV Transcription Factor Family AT2G46870 74.1 7.6e-51 198.0
Cmu05g2358 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 3.0e-39 159.5
Cmu10g2596 . 36 152 RAV Transcription Factor Family AT2G46870 65.8 4.3e-38 155.6
Cmu10g2596 . 34 163 RAV Transcription Factor Family AT3G11580 65.9 5.1e-44 174.9
Cmu06g0229 . 81 201 RAV Transcription Factor Family AT3G11580 59.1 7.6e-40 161.0
Cmu01g0125 . 29 140 RAV Transcription Factor Family AT3G11580 61.8 6.4e-39 157.9
Cmu07g0816 . 70 178 RAV Transcription Factor Family AT3G11580 63.9 1.4e-38 156.8
Cmu01g0125 . 28 144 RAV Transcription Factor Family AT3G61970 80.8 2.3e-52 203.0
Cmu06g0229 . 82 317 RAV Transcription Factor Family AT3G61970 50.2 4.0e-49 192.2
Cmu07g0816 . 69 206 RAV Transcription Factor Family AT3G61970 68.8 8.9e-49 191.0
Cmu05g2358 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Cmu06g0229 . 55 194 RAV Transcription Factor Family AT4G01500 61.0 2.4e-42 169.9
Cmu01g0125 . 30 141 RAV Transcription Factor Family AT4G01500 69.7 6.9e-42 168.3
Cmu07g0816 . 71 178 RAV Transcription Factor Family AT4G01500 66.4 6.0e-38 155.2
Cmu10g2596 . 41 236 RAV Transcription Factor Family AT5G06250 55.0 1.9e-50 196.4
Cmu06g0229 . 84 194 RAV Transcription Factor Family AT5G06250 64.5 1.8e-40 163.3
Cmu01g0125 . 30 138 RAV Transcription Factor Family AT5G06250 64.7 2.0e-39 159.8
Cmu05g2358 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 7.0e-37 151.4
Cmu06g1286 . 45 339 RAV Transcription Factor Family AT1G50680 52.2 3.3e-84 308.9
Cmu03g1980 . 47 360 RAV Transcription Factor Family AT1G50680 51.0 1.9e-79 293.1
Cmu06g1286 . 41 339 RAV Transcription Factor Family AT1G51120 52.7 1.5e-84 310.1
Cmu03g1980 . 52 279 RAV Transcription Factor Family AT1G51120 61.0 1.8e-77 286.6
Cmu05g2358 . 1 347 RAV Transcription Factor Family AT1G13260 62.3 2.4e-106 382.5
Cmu03g1564 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.2e-92 337.0
Cmu01g0125 . 31 138 RAV Transcription Factor Family AT1G13260 71.6 8.1e-38 154.8
Cmu06g0229 . 80 194 RAV Transcription Factor Family AT1G13260 66.4 1.4e-37 154.1
Cmu10g2596 . 41 153 RAV Transcription Factor Family AT1G13260 69.0 1.4e-37 154.1
Cmu05g2358 . 6 314 RAV Transcription Factor Family AT3G25730 64.0 9.5e-100 360.5
Cmu03g1564 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 9.8e-89 323.9
Cmu10g2596 . 41 153 RAV Transcription Factor Family AT3G25730 64.6 1.5e-36 150.6
Cmu05g2358 . 1 348 RAV Transcription Factor Family AT1G68840 61.9 3.3e-111 398.7
Cmu03g1564 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.1e-93 338.6
Cmu10g2596 . 41 155 RAV Transcription Factor Family AT1G68840 69.8 9.8e-39 157.9
Cmu01g0125 . 30 138 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.1
Cmu06g0229 . 84 201 RAV Transcription Factor Family AT1G68840 63.3 1.1e-37 154.5
Cmu05g2358 . 6 314 RAV Transcription Factor Family AT3G25730 64.0 9.5e-100 360.5
Cmu03g1564 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 9.8e-89 323.9
Cmu10g2596 . 41 153 RAV Transcription Factor Family AT3G25730 64.6 1.5e-36 150.6
Cmu06g1286 . 41 339 RAV Transcription Factor Family AT1G51120 52.7 1.5e-84 310.1
Cmu03g1980 . 52 279 RAV Transcription Factor Family AT1G51120 61.0 1.8e-77 286.6
Cmu10g2596 . 34 163 RAV Transcription Factor Family AT3G11580 65.9 5.1e-44 174.9
Cmu06g0229 . 81 201 RAV Transcription Factor Family AT3G11580 59.1 7.6e-40 161.0
Cmu01g0125 . 29 140 RAV Transcription Factor Family AT3G11580 61.8 6.4e-39 157.9
Cmu07g0816 . 70 178 RAV Transcription Factor Family AT3G11580 63.9 1.4e-38 156.8
Cmu06g0229 . 55 194 RAV Transcription Factor Family AT4G01500 61.0 2.4e-42 169.9
Cmu01g0125 . 30 141 RAV Transcription Factor Family AT4G01500 69.7 6.9e-42 168.3
Cmu07g0816 . 71 178 RAV Transcription Factor Family AT4G01500 66.4 6.0e-38 155.2
Cmu10g2596 . 41 156 RAV Transcription Factor Family AT2G36080 76.7 7.5e-48 187.2
Cmu06g0229 . 79 194 RAV Transcription Factor Family AT2G36080 68.9 5.5e-43 171.0
Cmu07g0816 . 67 178 RAV Transcription Factor Family AT2G36080 70.1 7.5e-40 160.6
Cmu01g0125 . 29 138 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Cmu05g2358 . 178 322 RAV Transcription Factor Family AT2G36080 54.8 3.1e-38 155.2
Cmu10g2596 . 41 236 RAV Transcription Factor Family AT5G06250 55.0 1.9e-50 196.4
Cmu06g0229 . 84 194 RAV Transcription Factor Family AT5G06250 64.5 1.8e-40 163.3
Cmu01g0125 . 30 138 RAV Transcription Factor Family AT5G06250 64.7 2.0e-39 159.8
Cmu05g2358 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 7.0e-37 151.4
Cmu01g0125 . 29 144 RAV Transcription Factor Family AT2G46870 87.2 2.1e-56 216.5
Cmu06g0229 . 74 325 RAV Transcription Factor Family AT2G46870 50.2 3.6e-53 205.7
Cmu07g0816 . 70 202 RAV Transcription Factor Family AT2G46870 74.1 7.6e-51 198.0
Cmu05g2358 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 3.0e-39 159.5
Cmu10g2596 . 36 152 RAV Transcription Factor Family AT2G46870 65.8 4.3e-38 155.6
Cmu06g1286 . 45 339 RAV Transcription Factor Family AT1G50680 52.2 3.3e-84 308.9
Cmu03g1980 . 47 360 RAV Transcription Factor Family AT1G50680 51.0 1.9e-79 293.1
Cmu01g0125 . 28 144 RAV Transcription Factor Family AT3G61970 80.8 2.3e-52 203.0
Cmu06g0229 . 82 317 RAV Transcription Factor Family AT3G61970 50.2 4.0e-49 192.2
Cmu07g0816 . 69 206 RAV Transcription Factor Family AT3G61970 68.8 8.9e-49 191.0
Cmu05g2358 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Cmu05g2358 . 1 347 RAV Transcription Factor Family AT1G13260 62.3 2.4e-106 382.5
Cmu03g1564 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.2e-92 337.0
Cmu01g0125 . 31 138 RAV Transcription Factor Family AT1G13260 71.6 8.1e-38 154.8
Cmu06g0229 . 80 194 RAV Transcription Factor Family AT1G13260 66.4 1.4e-37 154.1
Cmu10g2596 . 41 153 RAV Transcription Factor Family AT1G13260 69.0 1.4e-37 154.1
Cmu05g2358 . 1 348 RAV Transcription Factor Family AT1G68840 61.9 3.3e-111 398.7
Cmu03g1564 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.1e-93 338.6
Cmu10g2596 . 41 155 RAV Transcription Factor Family AT1G68840 69.8 9.8e-39 157.9
Cmu01g0125 . 30 138 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.1
Cmu06g0229 . 84 201 RAV Transcription Factor Family AT1G68840 63.3 1.1e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5938 PF02362 B3 6.80E-27 CL0405 Cmu TF