Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1980 ATGGAAGACGAAGCCTCCTCCAGTTTCCTTTCCCATATCAAGACTCCTATTCTAACAGACGAAGTTTCAGATTCTAATTTCACATATTATGCCATACCTGAAGCTAAGCGGCCGAGATTGGACAACGATCTTAATGATGTTGTCGCCGTCGGGAAATTCAAAGGCGTTGTTCCGCAACAGAATGGCCGTTGGGGAGCGCAGATCTACGCGAATCACCAGAGGATCTGGCTCGGTACCTTCAAAACAGAGAAAGACGCTGCCATGGCTTACGACAGCGCCGCTATCAAGCTTCGCACCAGAGATTCTCACCGGAATTTCCCCTGGACTCGCCGAACAATCGAGGAGCCAAATTTTCAAATCAAATTCTCCACAGACGCCGTTCTGAGTATGATCAAAGACGGGTCATATTACTCGAAATTTTCCGCTTATTTACGAACGCGATCGCAAATTCACGACTCGAATTTACAGAATCCTCAAAATTTCGACAATACCGATGGCGATAGCCTTTTCTCTTGCAGTCATCTATTCCAGAAGGAATTAACACCGAGCGATGTCGGCAAGTTGAATCGACTCGTAATCCCTAAAAAATACGCAGTGAAACACTTTCCATACATCAGCGAAAGCGCAGAGGAGAACGGCGATGACATTGAAATCGTCTTCTACGATACGTCGATGAAGACGTGGAAGTTCCGATATTGTTACTGGAGGAGCAGCCAGAGCTTCGTCTTTACCAGAGGCTGGAATCGCTTCGTGAAGGAGAAGAAACTGAAGGCAAACGACATTATCACGTTTTACACATACGAGAGCTGTGGAAGAGACGAAAATGGCGGAACATTGAACTTCATAGACGTAATCTATAAGAAATCGGAGGATGATCAGAGCGACAGTAGTTGCTTAGCGGCGGAGAAAGAGAGTGTTAAGAATGAGCAAATATTGGAGAGCGAATTAGGGCAAAATCAGGGGAAGGGTTGTGAGAAGGAGAAGAACAAGAAGAAGAAGGAGATTTTAAGCATTGAATTGAACCCTAATGATAAAAATGTTGGGGGAAAGCGTATTAGGCTATTTGGAGTGCATATTGATTGA 1083 44.88 MEDEASSSFLSHIKTPILTDEVSDSNFTYYAIPEAKRPRLDNDLNDVVAVGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKTEKDAAMAYDSAAIKLRTRDSHRNFPWTRRTIEEPNFQIKFSTDAVLSMIKDGSYYSKFSAYLRTRSQIHDSNLQNPQNFDNTDGDSLFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISESAEENGDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGRDENGGTLNFIDVIYKKSEDDQSDSSCLAAEKESVKNEQILESELGQNQGKGCEKEKNKKKKEILSIELNPNDKNVGGKRIRLFGVHID 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27778749 27779831 - CmPI595203_03g019800.1 Cmu03g1980 412766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1980 360 SUPERFAMILY DNA-binding pseudobarrel domain 174 269 IPR015300 -
Cmu03g1980 360 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g1980 360 SMART B3_2 176 285 IPR003340 GO:0003677(InterPro)
Cmu03g1980 360 CDD B3_DNA 174 281 IPR003340 GO:0003677(InterPro)
Cmu03g1980 360 CDD AP2 52 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g1980 360 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 52 359 IPR044800 GO:0003700(InterPro)
Cmu03g1980 360 Gene3D - 164 296 IPR015300 -
Cmu03g1980 360 SMART rav1_2 52 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g1980 360 Gene3D AP2/ERF domain 52 108 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g1980 360 FunFam AP2 domain-containing protein RAP2.8 51 108 - -
Cmu03g1980 360 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677(InterPro)
Cmu03g1980 360 Pfam B3 DNA binding domain 176 266 IPR003340 GO:0003677(InterPro)
Cmu03g1980 360 ProSiteProfiles B3 DNA-binding domain profile. 176 289 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1980 Cmu-Chr3:27778749 Cmu06g1286 Cmu-Chr6:24025250 1.90E-82 dispersed
Cmu03g1980 Cmu-Chr3:27778749 Cmu05g2358 Cmu-Chr5:32784659 2.70E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5938 PF02362 B3 6.80E-27 CL0405 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1980 K09287 - csv:101219913 645.58