Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1993 ATGGACTTTAAATGTGCAGGACCTTCTGAATGGAGCAGTGGACTAAAGCATGAAGCGCCCACCTTCCTTTCATTTCAAATTAACTTCATTATGAAACAAAGCATTGTCTCCCCTAAAGGTTCTAAAGGAAAAGAAGCTGCAAACAATAATAATGGGCAGGCGCCACATTCTGCATGGAGAAACTATGATGATTTTAACGAGTATTTCTGGTCGCTTAGATGCTTTGACCTCAGTTGGCCATGGCATAAAGGCAAATCTTTTTTTCAAAAGCCAACACCAATATCAAAGCCTAAGAAGACCTTTTACAGGTTTATGAACCTTGTGTTTGGGATCCTGAAGTGCATCTTCCATGATATGCTTGGTAGAAGTCGCCATCAAGGGAAAACGTCATTTGTTGAGCATCGGACTTTTCTTCATCTTTATCATAGTTTCCATCGCTTATGGATATTTTTGGTCATGACGTTTCAGGCTCTGACCATTGTTGCATTTAACAATGGAAGCTTTAATATGAAGACCCTGCTGGAAGTTCTGAGTCTTGGTCCGACATTTGTTGTAATGAAGTTGATTGAGAGTGTTCTAGACATCCTAATGATGTATGGTGCATACTCTACTTCATGGCGTCTTTTTGTTTCTCGAATTCTTCGTTTTCTTTGGTTTAGTACTGCATCAGCTTCGACAACATTTCTTTATGTGAAAGCTCTTCAGGAGGGGAGTAAACCAAATGCAGAAAGAGTGATGTTCAGACTATATGTAATTGTGATTGGAATATATGGTGGTGTACAGCTTTGTCTCAATATCCTCATGCATATACCTGCTTGCCGTCTTTTAACAAATCAATGTGATTGGTGGCCTCTTGTTCGCTTTTTCAAGTGGATGCGTCAGGAACGTTACTATGTTGGACGTGGGATGTATGAGAGGACTATTGACTTTATCAAGCTCTGGATATTGATGAGAATATTAGCACATCTGACAACCAAAAGGCTTGGTTAG 990 39.8 MDFKCAGPSEWSSGLKHEAPTFLSFQINFIMKQSIVSPKGSKGKEAANNNNGQAPHSAWRNYDDFNEYFWSLRCFDLSWPWHKGKSFFQKPTPISKPKKTFYRFMNLVFGILKCIFHDMLGRSRHQGKTSFVEHRTFLHLYHSFHRLWIFLVMTFQALTIVAFNNGSFNMKTLLEVLSLGPTFVVMKLIESVLDILMMYGAYSTSWRLFVSRILRFLWFSTASASTTFLYVKALQEGSKPNAERVMFRLYVIVIGIYGGVQLCLNILMHIPACRLLTNQCDWWPLVRFFKWMRQERYYVGRGMYERTIDFIKLWILMRILAHLTTKRLG 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28009576 28019607 + CmPI595203_03g019930.1 Cmu03g1993 412779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1993 329 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 44 316 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
Cmu03g1993 329 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 43 79 IPR026899 -
Cmu03g1993 329 SMART FKS1_dom1_2 17 82 IPR026899 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1993 K11000 - - csv:101216435 460.299
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1993 Cmu-Chr3:28009576 Cmu03g1999 Cmu-Chr3:28112748 8.40E-125 dispersed
Cmu03g1989 Cmu-Chr3:27901461 Cmu03g1993 Cmu-Chr3:28009576 1.70E-127 proximal
Cmu03g1993 Cmu-Chr3:28009576 Cmu09g0359 Cmu-Chr9:3425207 8.10E-11 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu11g1148 . 1 1032 Cell Wall Biosynthesis AT5G17420 85.4 0.0e+00 1840.5
Cmu05g1733 . 1 1082 Cell Wall Biosynthesis AT5G17420 65.7 0.0e+00 1432.5
Cmu04g0396 . 9 1050 Cell Wall Biosynthesis AT5G17420 67.7 0.0e+00 1431.4
Cmu08g0200 . 1 1087 Cell Wall Biosynthesis AT5G17420 63.0 0.0e+00 1412.5
Cmu01g1525 . 44 1109 Cell Wall Biosynthesis AT5G17420 64.6 0.0e+00 1409.0
Cmu06g0144 . 1132 2147 Cell Wall Biosynthesis AT5G17420 66.3 0.0e+00 1390.2
Cmu09g0397 . 12 1046 Cell Wall Biosynthesis AT5G17420 66.9 0.0e+00 1376.3
Cmu03g1343 . 387 1362 Cell Wall Biosynthesis AT5G17420 61.5 0.0e+00 1270.4
Cmu03g1989 . 144 1979 Cell Wall Biosynthesis AT3G07160 77.0 0.0e+00 2848.9
Cmu06g1813 . 1 1902 Cell Wall Biosynthesis AT3G07160 61.7 0.0e+00 2345.1
Cmu03g1999 . 1 1764 Cell Wall Biosynthesis AT3G07160 54.4 0.0e+00 1734.5
Cmu03g1995 . 51 1183 Cell Wall Biosynthesis AT3G07160 75.0 0.0e+00 1692.9
Cmu03g1993 . 35 312 Cell Wall Biosynthesis AT3G07160 60.9 4.5e-90 330.9
Cmu03g1991 . 15 219 Cell Wall Biosynthesis AT3G07160 71.2 7.8e-74 276.9
Cmu03g1992 . 50 192 Cell Wall Biosynthesis AT3G07160 71.8 1.6e-58 226.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000469 1 5 2 3 3 6 6 7 6 2 5 7 3 2 2 4 6 2 4 7 2 2 2 5 6 5 2 3 4 3 117