Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1993 ATGGACTTTAAATGTGCAGGACCTTCTGAATGGAGCAGTGGACTAAAGCATGAAGCGCCCACCTTCCTTTCATTTCAAATTAACTTCATTATGAAACAAAGCATTGTCTCCCCTAAAGGTTCTAAAGGAAAAGAAGCTGCAAACAATAATAATGGGCAGGCGCCACATTCTGCATGGAGAAACTATGATGATTTTAACGAGTATTTCTGGTCGCTTAGATGCTTTGACCTCAGTTGGCCATGGCATAAAGGCAAATCTTTTTTTCAAAAGCCAACACCAATATCAAAGCCTAAGAAGACCTTTTACAGGTTTATGAACCTTGTGTTTGGGATCCTGAAGTGCATCTTCCATGATATGCTTGGTAGAAGTCGCCATCAAGGGAAAACGTCATTTGTTGAGCATCGGACTTTTCTTCATCTTTATCATAGTTTCCATCGCTTATGGATATTTTTGGTCATGACGTTTCAGGCTCTGACCATTGTTGCATTTAACAATGGAAGCTTTAATATGAAGACCCTGCTGGAAGTTCTGAGTCTTGGTCCGACATTTGTTGTAATGAAGTTGATTGAGAGTGTTCTAGACATCCTAATGATGTATGGTGCATACTCTACTTCATGGCGTCTTTTTGTTTCTCGAATTCTTCGTTTTCTTTGGTTTAGTACTGCATCAGCTTCGACAACATTTCTTTATGTGAAAGCTCTTCAGGAGGGGAGTAAACCAAATGCAGAAAGAGTGATGTTCAGACTATATGTAATTGTGATTGGAATATATGGTGGTGTACAGCTTTGTCTCAATATCCTCATGCATATACCTGCTTGCCGTCTTTTAACAAATCAATGTGATTGGTGGCCTCTTGTTCGCTTTTTCAAGTGGATGCGTCAGGAACGTTACTATGTTGGACGTGGGATGTATGAGAGGACTATTGACTTTATCAAGCTCTGGATATTGATGAGAATATTAGCACATCTGACAACCAAAAGGCTTGGTTAG 990 39.8 MDFKCAGPSEWSSGLKHEAPTFLSFQINFIMKQSIVSPKGSKGKEAANNNNGQAPHSAWRNYDDFNEYFWSLRCFDLSWPWHKGKSFFQKPTPISKPKKTFYRFMNLVFGILKCIFHDMLGRSRHQGKTSFVEHRTFLHLYHSFHRLWIFLVMTFQALTIVAFNNGSFNMKTLLEVLSLGPTFVVMKLIESVLDILMMYGAYSTSWRLFVSRILRFLWFSTASASTTFLYVKALQEGSKPNAERVMFRLYVIVIGIYGGVQLCLNILMHIPACRLLTNQCDWWPLVRFFKWMRQERYYVGRGMYERTIDFIKLWILMRILAHLTTKRLG 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28009576 28019607 + CmPI595203_03g019930.1 Cmu03g1993 412779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1993 329 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 44 316 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
Cmu03g1993 329 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 43 79 IPR026899 -
Cmu03g1993 329 SMART FKS1_dom1_2 17 82 IPR026899 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1993 Cmu-Chr3:28009576 Cmu03g1999 Cmu-Chr3:28112748 8.40E-125 dispersed
Cmu03g1989 Cmu-Chr3:27901461 Cmu03g1993 Cmu-Chr3:28009576 1.70E-127 proximal
Cmu03g1993 Cmu-Chr3:28009576 Cmu09g0359 Cmu-Chr9:3425207 8.10E-11 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1993 K11000 - csv:101216435 460.299