Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1999 ATGACTGTCATTAAGCAAACGCTAGCCAAGAGGGAGGGTGGAACCATAGATAGAAGCCATGACATTACTCGGTTACAGGAGTTCTACAAACTATACCAAGAGAAAAATAGTGTAGATAAGCTTTGGGAAGGTGAAATGAAATTGAGGGAATCTGGTGCTTTCAGTGCAATGGGAAAGGGTACGGGTAGTTTTAGAAAGAGGAGGAACAAGACCCATACTCTCTGTGTGCGGTGTGGCCATCGCAACTTCCATCTCCGGAAGAGTTGCTGTGCAGCCTGTGCTTTCACTGTTGCTCGCAAGTACTTGCACCACGTTCCGCATAGATTTAAGAGCGGCTTCAGAGAGGGTACTGAAGCTGCACCCATGAATACAGGAGCTGTAGCATTAGCGTTGGAATGGAAAACATTGAAGCGAAAAAAAGGCTTTGCAACCCTGAAAGTATTGGCCATGGTACTGAAGCAACTCAGTGATGCAATTCCTGAAGAGATGAAAAGACTCATGGAATTGGATGCGGCAATGACAGAGGACCTAATTGCATATAATATTATTCCATTAGATGCTCCTTCTATGACAAATGTTATTGGGTCCTTGGCTGAGGTGCAAGCAGCAGTGTCAGCTTTAAAGTATTTCAGTGGCCTTCCAAAGTTGCCTGCAGAATTTTCTATTCCGGAGACTAAGAGTCCTGATATACTTGACTTTCTACACTTCGTTTTTGGATTTCAGAAAGACAATGTGTCTAATCAGCGCGAACATGTAGTGCACCTACTTGCCAATGAACAATCTCGACTTCGTATACTTGAAGAAACTGAATCAAAATTGGATGCAGCTGCTGTGGAGGGTGTTTTTAAGAAGTCTCTGGAAAACTATGTTAAATGGTGTGAATATTTATGCATTCAACCTGTTTGGAGCAGTTTGTCTGCTGTTAGCAAGGAAAAGAAGCTATTATTTATTTCCTTGTACTTTCTTATATGGGGGGAAGCATCCAACGTCAGATTTCTCCCAGAATGCTTATGCTACATATTTCACCATATGGTTCAGGAAATGGATGAAGTATTGAGGCATCGGATTGCGCAGCCAGCCAAGAGCTGTGAGTCTAAATATGGTGTTTCTTTCCTTGATCAAGTTATCTGTCCTCTTTATGAGGTTCTGGCTGCGGAAGCTGCAAACAATAATAATGGGCAGGCACCATATTCTGCATGGAGAAACTATGATGATTTTAACGAGTATTTCTGGTCGCTTAGATGCTTTGACCTCAGTTGGCCATGGCATAAAGGCAAATCTTTTTTTCAAAAGCCAACACCAAAATCAAAGAGTATGCTTGGTAGAAGTCGTCATCAAGGGAAAACGTCATTTGTTGAGCATCGTACTTTTCTTCGTCTTTATCATAGTTTCCATCGTTTATGGATATTTTTGGTTATGACATTCCAGGCTCTGACCATTGTTGCATTTAACAATGGAAACTTTAATATGAAGACATGGCTGGAAGTTCTGAGTCTTGGTCCGACATTTGTTGTAATGAAGTTTATTGAGAGTGTTCTAGACATCCTAATGATGTATGGTGCATATTCTACTTCAAGGCGTATTTTTGTTTCTCGAATTCTTCTTCGTTTTCTTTGGTTCAGTATTGCATCAGCTTTGATAACATTTCTTTATGTGGAAGCTCTTCAGGAAAGGAGTAAACCAAATGCAGAAAGAGTGATGTTCAGACTATATGTAATTGTGATTGGAATATATGGTGGTGTACAGCTTTGTCCCAGTATCCTCATGCATATACCTGCTTGCCGTCTTTTAATGAATCAATGTGATTTGTGGCCTCTTGTTCGCTTTTTCAAGTGGATGCGTCAGGAACGGTACTATGTTGGAAGTGGGATGTATGAGAGGACTACTGACTTTATTAAATACATGCTTCTGTGGATTATCATTCTTGGTGGAAAACTTGCACTTGCTTATTTTCTTCAGATCAAGCCTCTTGTTGGACCTACAAGGCTTATTGTAAATAGGAGAGATATAAGATATTCGTGGCATGACTTTGTGTCTAAAGATAATCATAATGCATTGACTATTCTTAGCTTGTGGGCCCCCGTGGTTGTTATTTACATCTTGGACATCCATGTTTTCTATACTATTATATCGGCCATATGGAGTTTCTTAATTGGGGCAAGAGACCGTCTTGGAGAGATTAGATCATTAGAAGCCATACATAAACTGTTTAATCGGTTTCCTGGAGCTTTTATGGACACTCTACATGTTCCTCTCCAAGACAGGCTTGGGCCTTCGAATCGGTCATTAAGTCAGGTTGTTGAGAAAGACAAGTTTGATGCTGCTCGATTTTCTCCCTTCTGGAATGAAATCATAGCAAGTTTACGGGAAGAAGATTATATTACAAACTTGGAAATGGAGTTACTTCAAATGCCTAAAAACAATGGTAATCTTCCCATGGTTCAGTGGCCACTTTTTCTTCTTGTCAGCAAGATATCTCTAGCTAAGGATATTGCTGTTAAAAGACGAGATTCGCAAGACAAGCTGTGGAAGCATATTTCCAGAGATGACTATATGAAATATGCAGTACACGAATGTTACCACGCCATTAAGCTTATCTTAATGGAATTACTAGTTGGGGAAGGAAGGATGTGGGTTGAAAGGGTATTTGAAGACACTGAAGCTAGTTTAGCAAACAATTCCATTCTAAATGACTTCCAGCTAAATAAGTTGCCACTTGTGATTACAAGAGTAACTGCTCTGATGGGTATTTTGAAAGAGCCAGAAACTTCGGAGCTGGAAAAAGAGGCTATTAAGGCTGTTCAAGATTTGTATGATGTTGTGCACCATGATCTCCTTTCCAGTGACAAGAGGGGGCACTATGAAACATGGAACATATTAGTAAAAGCCAGAAATGAAGGTCGTTTGTTTACAAAGTTAAATTGGCCCAAAGATTTAGAATTGAAGTCACAAGTCAAAAGATTGTATTCCTTGTTAACCATTAAAAAGACAACTTTAGATATTCCATTTAACTTTGAGGCCCAACGGAGACTGCAATTCTTTACAAATTCACTTTTCATGGTGATGCCAACTCCAAAACTTGTTCGTCAGATGCTTTCCTTCAGTGTATTCACTCCGTATTATTCTGAGACGGTGCTCTATAGTATGGGGGAACTCCTGAAGAAAAATGAGGATGGGATAACAACCTTGCTTTACCTGCAAAAAATTTATCCAGTAGAAGCCACTTCTTACGTTCATAAGGAGTTATTTTATAAAGATTTCAACAATTCGATAGATCAACACAGAGTGAACAAAGTGGCAGAGGATGAAGTTGGCGGTTTTAACTCAATAAGCCGCGTAAGAAAGGGACGTAAGTTTATTCCATCGTCGGAAAAAGGATTGGAAAAGGCCGAGGATGAAGGAATTGTTGTGCCAGTGGCAAGGAATGCTGAAGGCCAGGCAAGAGACGCGTCTCTTCATATTCTTAGCCAAAAAGCTGAAAAGTCTAATCTGTGTGAGAACAAAGGTGAAGGAGTCGAAAAGTTGGAAGTTAATTGGAGAGAGAATTCCGGCGGCCGCATTTATCGAATTCCAAGGTCGGATGAGGAAGGCATTCAGTCATCTGAGCCAAAATCCCAGCGAGAGTCCCAGCGAGATCCAATCCAGGACTTGACTTGCATCCCTGACTCCCAGCGAGACTCACAGCGAGAACCAAACCGAGAGTCATCTTGCTACCTAGATTCTCAGCGAGAACCATCCCGAGAGTCGACTCGCTGCCCGGACCACCAGCGAGTTTCCCAGCGAAAATCAATGCGGGAATCGACTCTCATCACAGGACCACAGCGAGATTTCCAGCGATATCCACTCCAGGAGCCGCCTTGCCTTACAATGGAACTAGATCAACGCGCATTTATTATTGATTCAAGCATTAAAAGCAATAATAAAGAGAGAGAAATTGAAAAGACGCTTGAAGAGGAAAAGGCAGCCGGTTTAATCCAGCGTGTGGCCAATAAAAAGGGGTTGGAAGGTATATTAAATGATGGAGTAAATGAGGAATTATGCCTTAAACTCCACCGGCCTAATCGATTCGCATTTCCGCAGAACAATTCAAAGGATATACAAGATGTTTTCGAAAAGTCACATGCAGGAAGTTTGGGCGACGACATTAATACGCGTGCATTAAATAATGTGGTATTCCAAGAACCAATGACAGCAATGACAGAAGGAACTGTCACTCCTTCCGAAGCCTCTCCGAATCCTCAATCGTGTAATCTCAGCACGACTCATTATCATGAGTTGTGGAGATTCACCGACAATGATTTCTCATTACATGAGTGGAAGAACTTTCTTGCTCGAATTGGCCGAGATGAGAATGAAGTTGACCCAGAATCGTTTGATAATCCTAATGACATCCTTGCATTGCGATTTTGGGCCTCTTATCGAGGACAGACATTAGCAAGAACAGTTCGTGGAATGATGTACTATAGGAAAGCTCTTATGCTGCAGACTTATTTAGAGAGAGGAACTTATGGAGACTTCAAAGCTGCCATTCCTTGTACTGATGCTACTGATACTCGGGGTTTCGATTTATCTCCTGAAGCACGTGCACTAGCAGATCTTAAATTTACATATGTTGTGACATGTCAGATATATGGCAGACAAAGAGAACAACAAAAACCAGAGGCCGCTGACATTGCATTGCTTATGCAAAGAAATGAAGCCCTTCGTGTTGCCTACATCGATGATATTGAAACCCTGAAGGATGGTAAGGTGCACAAAGAATTTTACTCAAAGCTTGTAAAGGCTGATATCAATGGAAAAGATAAGGAGATATATTCAATCAAATTGCCTGGAGATCCAAAGTTGGGTGAAGGAAAGCCTGAGAATCAAAACCATGCTATTGTTTTTACTCGTGGAAATGCTATTCAGACAATTGATATGAATCAGGATAATTACTTTGAAGAAGCATTGAAGATGAGAAATCTTCTCGAGGAATTTGATCATTATCATGGTATTCGTCCTCCTACCATACTAGGTGTCAGGGAACATGTATTTACGGGGAGTGTTTCATCTCTTGCTTCATTCATGTCAAATCAAGAAGCTACTTTTGTGACTCTTGGTCAACGTATTCTGGCAAATCCCTTGAAAGTGCGTATGCATTATGGCCATCCAGATGTTTTTGATAGAGTTTTTCATCTAACACGAGGTGGCATCAGCAAGGCCTCCCGTGTTATCAACATTAGTGAAGATGTCTTTGCAGGATTTAATACAACATTGAGGCAAGGGAACGTTACTCATCATGAGTATATTCAG 5292 40.97 MTVIKQTLAKREGGTIDRSHDITRLQEFYKLYQEKNSVDKLWEGEMKLRESGAFSAMGKGTGSFRKRRNKTHTLCVRCGHRNFHLRKSCCAACAFTVARKYLHHVPHRFKSGFREGTEAAPMNTGAVALALEWKTLKRKKGFATLKVLAMVLKQLSDAIPEEMKRLMELDAAMTEDLIAYNIIPLDAPSMTNVIGSLAEVQAAVSALKYFSGLPKLPAEFSIPETKSPDILDFLHFVFGFQKDNVSNQREHVVHLLANEQSRLRILEETESKLDAAAVEGVFKKSLENYVKWCEYLCIQPVWSSLSAVSKEKKLLFISLYFLIWGEASNVRFLPECLCYIFHHMVQEMDEVLRHRIAQPAKSCESKYGVSFLDQVICPLYEVLAAEAANNNNGQAPYSAWRNYDDFNEYFWSLRCFDLSWPWHKGKSFFQKPTPKSKSMLGRSRHQGKTSFVEHRTFLRLYHSFHRLWIFLVMTFQALTIVAFNNGNFNMKTWLEVLSLGPTFVVMKFIESVLDILMMYGAYSTSRRIFVSRILLRFLWFSIASALITFLYVEALQERSKPNAERVMFRLYVIVIGIYGGVQLCPSILMHIPACRLLMNQCDLWPLVRFFKWMRQERYYVGSGMYERTTDFIKYMLLWIIILGGKLALAYFLQIKPLVGPTRLIVNRRDIRYSWHDFVSKDNHNALTILSLWAPVVVIYILDIHVFYTIISAIWSFLIGARDRLGEIRSLEAIHKLFNRFPGAFMDTLHVPLQDRLGPSNRSLSQVVEKDKFDAARFSPFWNEIIASLREEDYITNLEMELLQMPKNNGNLPMVQWPLFLLVSKISLAKDIAVKRRDSQDKLWKHISRDDYMKYAVHECYHAIKLILMELLVGEGRMWVERVFEDTEASLANNSILNDFQLNKLPLVITRVTALMGILKEPETSELEKEAIKAVQDLYDVVHHDLLSSDKRGHYETWNILVKARNEGRLFTKLNWPKDLELKSQVKRLYSLLTIKKTTLDIPFNFEAQRRLQFFTNSLFMVMPTPKLVRQMLSFSVFTPYYSETVLYSMGELLKKNEDGITTLLYLQKIYPVEATSYVHKELFYKDFNNSIDQHRVNKVAEDEVGGFNSISRVRKGRKFIPSSEKGLEKAEDEGIVVPVARNAEGQARDASLHILSQKAEKSNLCENKGEGVEKLEVNWRENSGGRIYRIPRSDEEGIQSSEPKSQRESQRDPIQDLTCIPDSQRDSQREPNRESSCYLDSQREPSRESTRCPDHQRVSQRKSMRESTLITGPQRDFQRYPLQEPPCLTMELDQRAFIIDSSIKSNNKEREIEKTLEEEKAAGLIQRVANKKGLEGILNDGVNEELCLKLHRPNRFAFPQNNSKDIQDVFEKSHAGSLGDDINTRALNNVVFQEPMTAMTEGTVTPSEASPNPQSCNLSTTHYHELWRFTDNDFSLHEWKNFLARIGRDENEVDPESFDNPNDILALRFWASYRGQTLARTVRGMMYYRKALMLQTYLERGTYGDFKAAIPCTDATDTRGFDLSPEARALADLKFTYVVTCQIYGRQREQQKPEAADIALLMQRNEALRVAYIDDIETLKDGKVHKEFYSKLVKADINGKDKEIYSIKLPGDPKLGEGKPENQNHAIVFTRGNAIQTIDMNQDNYFEEALKMRNLLEEFDHYHGIRPPTILGVREHVFTGSVSSLASFMSNQEATFVTLGQRILANPLKVRMHYGHPDVFDRVFHLTRGGISKASRVINISEDVFAGFNTTLRQGNVTHHEYIQ 1764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28112748 28179827 + CmPI595203_03g019990.1 Cmu03g1999 412785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1999 1764 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 17 1079 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
Cmu03g1999 1764 SMART FKS1_dom1_2 311 423 IPR026899 -
Cmu03g1999 1764 MobiDBLite consensus disorder prediction 1226 1262 - -
Cmu03g1999 1764 MobiDBLite consensus disorder prediction 1188 1211 - -
Cmu03g1999 1764 MobiDBLite consensus disorder prediction 1188 1280 - -
Cmu03g1999 1764 Pfam Ribosomal protein L37e 58 100 IPR001569 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cmu03g1999 1764 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 313 420 IPR026899 -
Cmu03g1999 1764 Gene3D - 57 122 IPR011331 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cmu03g1999 1764 Pfam 1,3-beta-glucan synthase component 1002 1091 IPR003440 GO:0000148(InterPro)|GO:0003843(InterPro)|GO:0006075(InterPro)|GO:0016020(InterPro)
Cmu03g1999 1764 Pfam 1,3-beta-glucan synthase component 1460 1764 IPR003440 GO:0000148(InterPro)|GO:0003843(InterPro)|GO:0006075(InterPro)|GO:0016020(InterPro)
Cmu03g1999 1764 SUPERFAMILY Zn-binding ribosomal proteins 57 100 IPR011332 GO:0006412(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0834 Cmu-Chr3:2676201 Cmu03g1999 Cmu-Chr3:28112748 2.00E-66 dispersed
Cmu03g1991 Cmu-Chr3:27980224 Cmu03g1999 Cmu-Chr3:28112748 1.80E-67 dispersed
Cmu03g1992 Cmu-Chr3:27998019 Cmu03g1999 Cmu-Chr3:28112748 1.10E-74 dispersed
Cmu03g1993 Cmu-Chr3:28009576 Cmu03g1999 Cmu-Chr3:28112748 8.40E-125 dispersed
Cmu03g1999 Cmu-Chr3:28112748 Cmu06g1813 Cmu-Chr6:29038063 0.00E+00 dispersed
Cmu03g1995 Cmu-Chr3:28055352 Cmu03g1999 Cmu-Chr3:28112748 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1999 K11000 - csv:101216435 1666.36