Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g1999 ATGACTGTCATTAAGCAAACGCTAGCCAAGAGGGAGGGTGGAACCATAGATAGAAGCCATGACATTACTCGGTTACAGGAGTTCTACAAACTATACCAAGAGAAAAATAGTGTAGATAAGCTTTGGGAAGGTGAAATGAAATTGAGGGAATCTGGTGCTTTCAGTGCAATGGGAAAGGGTACGGGTAGTTTTAGAAAGAGGAGGAACAAGACCCATACTCTCTGTGTGCGGTGTGGCCATCGCAACTTCCATCTCCGGAAGAGTTGCTGTGCAGCCTGTGCTTTCACTGTTGCTCGCAAGTACTTGCACCACGTTCCGCATAGATTTAAGAGCGGCTTCAGAGAGGGTACTGAAGCTGCACCCATGAATACAGGAGCTGTAGCATTAGCGTTGGAATGGAAAACATTGAAGCGAAAAAAAGGCTTTGCAACCCTGAAAGTATTGGCCATGGTACTGAAGCAACTCAGTGATGCAATTCCTGAAGAGATGAAAAGACTCATGGAATTGGATGCGGCAATGACAGAGGACCTAATTGCATATAATATTATTCCATTAGATGCTCCTTCTATGACAAATGTTATTGGGTCCTTGGCTGAGGTGCAAGCAGCAGTGTCAGCTTTAAAGTATTTCAGTGGCCTTCCAAAGTTGCCTGCAGAATTTTCTATTCCGGAGACTAAGAGTCCTGATATACTTGACTTTCTACACTTCGTTTTTGGATTTCAGAAAGACAATGTGTCTAATCAGCGCGAACATGTAGTGCACCTACTTGCCAATGAACAATCTCGACTTCGTATACTTGAAGAAACTGAATCAAAATTGGATGCAGCTGCTGTGGAGGGTGTTTTTAAGAAGTCTCTGGAAAACTATGTTAAATGGTGTGAATATTTATGCATTCAACCTGTTTGGAGCAGTTTGTCTGCTGTTAGCAAGGAAAAGAAGCTATTATTTATTTCCTTGTACTTTCTTATATGGGGGGAAGCATCCAACGTCAGATTTCTCCCAGAATGCTTATGCTACATATTTCACCATATGGTTCAGGAAATGGATGAAGTATTGAGGCATCGGATTGCGCAGCCAGCCAAGAGCTGTGAGTCTAAATATGGTGTTTCTTTCCTTGATCAAGTTATCTGTCCTCTTTATGAGGTTCTGGCTGCGGAAGCTGCAAACAATAATAATGGGCAGGCACCATATTCTGCATGGAGAAACTATGATGATTTTAACGAGTATTTCTGGTCGCTTAGATGCTTTGACCTCAGTTGGCCATGGCATAAAGGCAAATCTTTTTTTCAAAAGCCAACACCAAAATCAAAGAGTATGCTTGGTAGAAGTCGTCATCAAGGGAAAACGTCATTTGTTGAGCATCGTACTTTTCTTCGTCTTTATCATAGTTTCCATCGTTTATGGATATTTTTGGTTATGACATTCCAGGCTCTGACCATTGTTGCATTTAACAATGGAAACTTTAATATGAAGACATGGCTGGAAGTTCTGAGTCTTGGTCCGACATTTGTTGTAATGAAGTTTATTGAGAGTGTTCTAGACATCCTAATGATGTATGGTGCATATTCTACTTCAAGGCGTATTTTTGTTTCTCGAATTCTTCTTCGTTTTCTTTGGTTCAGTATTGCATCAGCTTTGATAACATTTCTTTATGTGGAAGCTCTTCAGGAAAGGAGTAAACCAAATGCAGAAAGAGTGATGTTCAGACTATATGTAATTGTGATTGGAATATATGGTGGTGTACAGCTTTGTCCCAGTATCCTCATGCATATACCTGCTTGCCGTCTTTTAATGAATCAATGTGATTTGTGGCCTCTTGTTCGCTTTTTCAAGTGGATGCGTCAGGAACGGTACTATGTTGGAAGTGGGATGTATGAGAGGACTACTGACTTTATTAAATACATGCTTCTGTGGATTATCATTCTTGGTGGAAAACTTGCACTTGCTTATTTTCTTCAGATCAAGCCTCTTGTTGGACCTACAAGGCTTATTGTAAATAGGAGAGATATAAGATATTCGTGGCATGACTTTGTGTCTAAAGATAATCATAATGCATTGACTATTCTTAGCTTGTGGGCCCCCGTGGTTGTTATTTACATCTTGGACATCCATGTTTTCTATACTATTATATCGGCCATATGGAGTTTCTTAATTGGGGCAAGAGACCGTCTTGGAGAGATTAGATCATTAGAAGCCATACATAAACTGTTTAATCGGTTTCCTGGAGCTTTTATGGACACTCTACATGTTCCTCTCCAAGACAGGCTTGGGCCTTCGAATCGGTCATTAAGTCAGGTTGTTGAGAAAGACAAGTTTGATGCTGCTCGATTTTCTCCCTTCTGGAATGAAATCATAGCAAGTTTACGGGAAGAAGATTATATTACAAACTTGGAAATGGAGTTACTTCAAATGCCTAAAAACAATGGTAATCTTCCCATGGTTCAGTGGCCACTTTTTCTTCTTGTCAGCAAGATATCTCTAGCTAAGGATATTGCTGTTAAAAGACGAGATTCGCAAGACAAGCTGTGGAAGCATATTTCCAGAGATGACTATATGAAATATGCAGTACACGAATGTTACCACGCCATTAAGCTTATCTTAATGGAATTACTAGTTGGGGAAGGAAGGATGTGGGTTGAAAGGGTATTTGAAGACACTGAAGCTAGTTTAGCAAACAATTCCATTCTAAATGACTTCCAGCTAAATAAGTTGCCACTTGTGATTACAAGAGTAACTGCTCTGATGGGTATTTTGAAAGAGCCAGAAACTTCGGAGCTGGAAAAAGAGGCTATTAAGGCTGTTCAAGATTTGTATGATGTTGTGCACCATGATCTCCTTTCCAGTGACAAGAGGGGGCACTATGAAACATGGAACATATTAGTAAAAGCCAGAAATGAAGGTCGTTTGTTTACAAAGTTAAATTGGCCCAAAGATTTAGAATTGAAGTCACAAGTCAAAAGATTGTATTCCTTGTTAACCATTAAAAAGACAACTTTAGATATTCCATTTAACTTTGAGGCCCAACGGAGACTGCAATTCTTTACAAATTCACTTTTCATGGTGATGCCAACTCCAAAACTTGTTCGTCAGATGCTTTCCTTCAGTGTATTCACTCCGTATTATTCTGAGACGGTGCTCTATAGTATGGGGGAACTCCTGAAGAAAAATGAGGATGGGATAACAACCTTGCTTTACCTGCAAAAAATTTATCCAGTAGAAGCCACTTCTTACGTTCATAAGGAGTTATTTTATAAAGATTTCAACAATTCGATAGATCAACACAGAGTGAACAAAGTGGCAGAGGATGAAGTTGGCGGTTTTAACTCAATAAGCCGCGTAAGAAAGGGACGTAAGTTTATTCCATCGTCGGAAAAAGGATTGGAAAAGGCCGAGGATGAAGGAATTGTTGTGCCAGTGGCAAGGAATGCTGAAGGCCAGGCAAGAGACGCGTCTCTTCATATTCTTAGCCAAAAAGCTGAAAAGTCTAATCTGTGTGAGAACAAAGGTGAAGGAGTCGAAAAGTTGGAAGTTAATTGGAGAGAGAATTCCGGCGGCCGCATTTATCGAATTCCAAGGTCGGATGAGGAAGGCATTCAGTCATCTGAGCCAAAATCCCAGCGAGAGTCCCAGCGAGATCCAATCCAGGACTTGACTTGCATCCCTGACTCCCAGCGAGACTCACAGCGAGAACCAAACCGAGAGTCATCTTGCTACCTAGATTCTCAGCGAGAACCATCCCGAGAGTCGACTCGCTGCCCGGACCACCAGCGAGTTTCCCAGCGAAAATCAATGCGGGAATCGACTCTCATCACAGGACCACAGCGAGATTTCCAGCGATATCCACTCCAGGAGCCGCCTTGCCTTACAATGGAACTAGATCAACGCGCATTTATTATTGATTCAAGCATTAAAAGCAATAATAAAGAGAGAGAAATTGAAAAGACGCTTGAAGAGGAAAAGGCAGCCGGTTTAATCCAGCGTGTGGCCAATAAAAAGGGGTTGGAAGGTATATTAAATGATGGAGTAAATGAGGAATTATGCCTTAAACTCCACCGGCCTAATCGATTCGCATTTCCGCAGAACAATTCAAAGGATATACAAGATGTTTTCGAAAAGTCACATGCAGGAAGTTTGGGCGACGACATTAATACGCGTGCATTAAATAATGTGGTATTCCAAGAACCAATGACAGCAATGACAGAAGGAACTGTCACTCCTTCCGAAGCCTCTCCGAATCCTCAATCGTGTAATCTCAGCACGACTCATTATCATGAGTTGTGGAGATTCACCGACAATGATTTCTCATTACATGAGTGGAAGAACTTTCTTGCTCGAATTGGCCGAGATGAGAATGAAGTTGACCCAGAATCGTTTGATAATCCTAATGACATCCTTGCATTGCGATTTTGGGCCTCTTATCGAGGACAGACATTAGCAAGAACAGTTCGTGGAATGATGTACTATAGGAAAGCTCTTATGCTGCAGACTTATTTAGAGAGAGGAACTTATGGAGACTTCAAAGCTGCCATTCCTTGTACTGATGCTACTGATACTCGGGGTTTCGATTTATCTCCTGAAGCACGTGCACTAGCAGATCTTAAATTTACATATGTTGTGACATGTCAGATATATGGCAGACAAAGAGAACAACAAAAACCAGAGGCCGCTGACATTGCATTGCTTATGCAAAGAAATGAAGCCCTTCGTGTTGCCTACATCGATGATATTGAAACCCTGAAGGATGGTAAGGTGCACAAAGAATTTTACTCAAAGCTTGTAAAGGCTGATATCAATGGAAAAGATAAGGAGATATATTCAATCAAATTGCCTGGAGATCCAAAGTTGGGTGAAGGAAAGCCTGAGAATCAAAACCATGCTATTGTTTTTACTCGTGGAAATGCTATTCAGACAATTGATATGAATCAGGATAATTACTTTGAAGAAGCATTGAAGATGAGAAATCTTCTCGAGGAATTTGATCATTATCATGGTATTCGTCCTCCTACCATACTAGGTGTCAGGGAACATGTATTTACGGGGAGTGTTTCATCTCTTGCTTCATTCATGTCAAATCAAGAAGCTACTTTTGTGACTCTTGGTCAACGTATTCTGGCAAATCCCTTGAAAGTGCGTATGCATTATGGCCATCCAGATGTTTTTGATAGAGTTTTTCATCTAACACGAGGTGGCATCAGCAAGGCCTCCCGTGTTATCAACATTAGTGAAGATGTCTTTGCAGGATTTAATACAACATTGAGGCAAGGGAACGTTACTCATCATGAGTATATTCAG 5292 40.97 MTVIKQTLAKREGGTIDRSHDITRLQEFYKLYQEKNSVDKLWEGEMKLRESGAFSAMGKGTGSFRKRRNKTHTLCVRCGHRNFHLRKSCCAACAFTVARKYLHHVPHRFKSGFREGTEAAPMNTGAVALALEWKTLKRKKGFATLKVLAMVLKQLSDAIPEEMKRLMELDAAMTEDLIAYNIIPLDAPSMTNVIGSLAEVQAAVSALKYFSGLPKLPAEFSIPETKSPDILDFLHFVFGFQKDNVSNQREHVVHLLANEQSRLRILEETESKLDAAAVEGVFKKSLENYVKWCEYLCIQPVWSSLSAVSKEKKLLFISLYFLIWGEASNVRFLPECLCYIFHHMVQEMDEVLRHRIAQPAKSCESKYGVSFLDQVICPLYEVLAAEAANNNNGQAPYSAWRNYDDFNEYFWSLRCFDLSWPWHKGKSFFQKPTPKSKSMLGRSRHQGKTSFVEHRTFLRLYHSFHRLWIFLVMTFQALTIVAFNNGNFNMKTWLEVLSLGPTFVVMKFIESVLDILMMYGAYSTSRRIFVSRILLRFLWFSIASALITFLYVEALQERSKPNAERVMFRLYVIVIGIYGGVQLCPSILMHIPACRLLMNQCDLWPLVRFFKWMRQERYYVGSGMYERTTDFIKYMLLWIIILGGKLALAYFLQIKPLVGPTRLIVNRRDIRYSWHDFVSKDNHNALTILSLWAPVVVIYILDIHVFYTIISAIWSFLIGARDRLGEIRSLEAIHKLFNRFPGAFMDTLHVPLQDRLGPSNRSLSQVVEKDKFDAARFSPFWNEIIASLREEDYITNLEMELLQMPKNNGNLPMVQWPLFLLVSKISLAKDIAVKRRDSQDKLWKHISRDDYMKYAVHECYHAIKLILMELLVGEGRMWVERVFEDTEASLANNSILNDFQLNKLPLVITRVTALMGILKEPETSELEKEAIKAVQDLYDVVHHDLLSSDKRGHYETWNILVKARNEGRLFTKLNWPKDLELKSQVKRLYSLLTIKKTTLDIPFNFEAQRRLQFFTNSLFMVMPTPKLVRQMLSFSVFTPYYSETVLYSMGELLKKNEDGITTLLYLQKIYPVEATSYVHKELFYKDFNNSIDQHRVNKVAEDEVGGFNSISRVRKGRKFIPSSEKGLEKAEDEGIVVPVARNAEGQARDASLHILSQKAEKSNLCENKGEGVEKLEVNWRENSGGRIYRIPRSDEEGIQSSEPKSQRESQRDPIQDLTCIPDSQRDSQREPNRESSCYLDSQREPSRESTRCPDHQRVSQRKSMRESTLITGPQRDFQRYPLQEPPCLTMELDQRAFIIDSSIKSNNKEREIEKTLEEEKAAGLIQRVANKKGLEGILNDGVNEELCLKLHRPNRFAFPQNNSKDIQDVFEKSHAGSLGDDINTRALNNVVFQEPMTAMTEGTVTPSEASPNPQSCNLSTTHYHELWRFTDNDFSLHEWKNFLARIGRDENEVDPESFDNPNDILALRFWASYRGQTLARTVRGMMYYRKALMLQTYLERGTYGDFKAAIPCTDATDTRGFDLSPEARALADLKFTYVVTCQIYGRQREQQKPEAADIALLMQRNEALRVAYIDDIETLKDGKVHKEFYSKLVKADINGKDKEIYSIKLPGDPKLGEGKPENQNHAIVFTRGNAIQTIDMNQDNYFEEALKMRNLLEEFDHYHGIRPPTILGVREHVFTGSVSSLASFMSNQEATFVTLGQRILANPLKVRMHYGHPDVFDRVFHLTRGGISKASRVINISEDVFAGFNTTLRQGNVTHHEYIQ 1764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28112748 28179827 + CmPI595203_03g019990.1 Cmu03g1999 412785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g1999 1764 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 17 1079 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
Cmu03g1999 1764 SMART FKS1_dom1_2 311 423 IPR026899 -
Cmu03g1999 1764 MobiDBLite consensus disorder prediction 1226 1262 - -
Cmu03g1999 1764 MobiDBLite consensus disorder prediction 1188 1211 - -
Cmu03g1999 1764 MobiDBLite consensus disorder prediction 1188 1280 - -
Cmu03g1999 1764 Pfam Ribosomal protein L37e 58 100 IPR001569 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cmu03g1999 1764 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 313 420 IPR026899 -
Cmu03g1999 1764 Gene3D - 57 122 IPR011331 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cmu03g1999 1764 Pfam 1,3-beta-glucan synthase component 1002 1091 IPR003440 GO:0000148(InterPro)|GO:0003843(InterPro)|GO:0006075(InterPro)|GO:0016020(InterPro)
Cmu03g1999 1764 Pfam 1,3-beta-glucan synthase component 1460 1764 IPR003440 GO:0000148(InterPro)|GO:0003843(InterPro)|GO:0006075(InterPro)|GO:0016020(InterPro)
Cmu03g1999 1764 SUPERFAMILY Zn-binding ribosomal proteins 57 100 IPR011332 GO:0006412(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g1999 K11000 - - csv:101216435 1666.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0834 Cmu-Chr3:2676201 Cmu03g1999 Cmu-Chr3:28112748 2.00E-66 dispersed
Cmu03g1991 Cmu-Chr3:27980224 Cmu03g1999 Cmu-Chr3:28112748 1.80E-67 dispersed
Cmu03g1992 Cmu-Chr3:27998019 Cmu03g1999 Cmu-Chr3:28112748 1.10E-74 dispersed
Cmu03g1993 Cmu-Chr3:28009576 Cmu03g1999 Cmu-Chr3:28112748 8.40E-125 dispersed
Cmu03g1999 Cmu-Chr3:28112748 Cmu06g1813 Cmu-Chr6:29038063 0.00E+00 dispersed
Cmu03g1995 Cmu-Chr3:28055352 Cmu03g1999 Cmu-Chr3:28112748 0.00E+00 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu11g1148 . 1 1032 Cell Wall Biosynthesis AT5G17420 85.4 0.0e+00 1840.5
Cmu05g1733 . 1 1082 Cell Wall Biosynthesis AT5G17420 65.7 0.0e+00 1432.5
Cmu04g0396 . 9 1050 Cell Wall Biosynthesis AT5G17420 67.7 0.0e+00 1431.4
Cmu08g0200 . 1 1087 Cell Wall Biosynthesis AT5G17420 63.0 0.0e+00 1412.5
Cmu01g1525 . 44 1109 Cell Wall Biosynthesis AT5G17420 64.6 0.0e+00 1409.0
Cmu06g0144 . 1132 2147 Cell Wall Biosynthesis AT5G17420 66.3 0.0e+00 1390.2
Cmu09g0397 . 12 1046 Cell Wall Biosynthesis AT5G17420 66.9 0.0e+00 1376.3
Cmu03g1343 . 387 1362 Cell Wall Biosynthesis AT5G17420 61.5 0.0e+00 1270.4
Cmu03g1989 . 144 1979 Cell Wall Biosynthesis AT3G07160 77.0 0.0e+00 2848.9
Cmu06g1813 . 1 1902 Cell Wall Biosynthesis AT3G07160 61.7 0.0e+00 2345.1
Cmu03g1999 . 1 1764 Cell Wall Biosynthesis AT3G07160 54.4 0.0e+00 1734.5
Cmu03g1995 . 51 1183 Cell Wall Biosynthesis AT3G07160 75.0 0.0e+00 1692.9
Cmu03g1993 . 35 312 Cell Wall Biosynthesis AT3G07160 60.9 4.5e-90 330.9
Cmu03g1991 . 15 219 Cell Wall Biosynthesis AT3G07160 71.2 7.8e-74 276.9
Cmu03g1992 . 50 192 Cell Wall Biosynthesis AT3G07160 71.8 1.6e-58 226.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000469 1 5 2 3 3 6 6 7 6 2 5 7 3 2 2 4 6 2 4 7 2 2 2 5 6 5 2 3 4 3 117