Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g2012 ATGCTCGGGATGGCGGCGGAGGCAGTGACAACCATGGCGGTCGTGGCGGTGGCCGGGTGGTTGCTATTTGGAGTTGAGGGTAGACAGCCAGTGTTGCATAGGGTTGGAGGAGGAAAATATACTTGGACACCTAATATTAACTTCACTGATTGGTCAATTCATGAACACTTTTATGTTGGTGATTGGCTTTATTTTGGGTTCGATAAACATATCTACAACGTGTTGGAAGTGAACAAAACGAGCTACGAGGGTTGCAACGACAAGGATTTCATTTTCAACATAACAAGGGGAGGGAGAGATGTGTTCAATCTAACAGAAGCAAAAACATATTACTTTCTAAGTGGAAGAGGATTTTGCTTTCAAGGAATGAAAGTTGCTGTTTTTGTTGAAGAGTACTCTCCTCCCATTTCACCACCAAATTTACCCAATACTTCTCCATCTTTACATTCATTAATATGGCCTTTCTCCCTCTTGCTATCCATCAACATTTCCATGGCTAATTCCTTCTTCTAA 513 42.11 MLGMAAEAVTTMAVVAVAGWLLFGVEGRQPVLHRVGGGKYTWTPNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNKTSYEGCNDKDFIFNITRGGRDVFNLTEAKTYYFLSGRGFCFQGMKVAVFVEEYSPPISPPNLPNTSPSLHSLIWPFSLLLSINISMANSFF 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28466034 28467148 - CmPI595203_03g020120.1 Cmu03g2012 412798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g2012 170 Gene3D - 31 133 IPR008972 -
Cmu03g2012 170 SUPERFAMILY Cupredoxins 32 129 IPR008972 -
Cmu03g2012 170 PANTHER BLUE COPPER PROTEIN 17 130 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Cmu03g2012 170 FunFam Lamin-like protein 29 132 - -
Cmu03g2012 170 Pfam Plastocyanin-like domain 42 123 IPR003245 GO:0009055(InterPro)
Cmu03g2012 170 ProSiteProfiles Phytocyanin domain profile. 31 131 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g2012 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2012 Cmu-Chr3:28466034 Cmu10g2301 Cmu-Chr10:29277908 2.60E-37 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g2300 . 14 127 Phytocyanin Superfamily AT3G01070 64.3 2.3e-38 155.6
Cmu08g1313 . 7 169 Phytocyanin Superfamily AT2G25060 53.0 1.5e-43 172.9
Cmu10g2300 . 12 178 Phytocyanin Superfamily AT5G15350 52.7 2.2e-47 185.7
Cmu08g1313 . 16 171 Phytocyanin Superfamily AT4G31840 54.5 7.9e-45 177.2
Cmu04g1176 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 6.4e-37 151.0
Cmu04g1176 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 6.4e-37 151.0
Cmu08g1313 . 7 169 Phytocyanin Superfamily AT2G25060 53.0 1.5e-43 172.9
Cmu08g1313 . 16 171 Phytocyanin Superfamily AT4G31840 54.5 7.9e-45 177.2
Cmu10g2300 . 14 127 Phytocyanin Superfamily AT3G01070 64.3 2.3e-38 155.6
Cmu10g2300 . 12 178 Phytocyanin Superfamily AT5G15350 52.7 2.2e-47 185.7
Cmu02g2248 . 11 229 Phytocyanin Superfamily AT1G08500 55.9 8.3e-63 237.3
Cmu03g2012 . 29 144 Phytocyanin Superfamily AT2G27035 58.6 2.1e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003401 0 1 0 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 1 2 1 1 1 2 2 3 3 1 49