Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g2014 ATGATGATGATGTTCAATGAGATGGGATTTTGTGATGATATGGATTTCCTTTCTGCTCCAATTGTGGAAGGAGATTCTGGAGCTCCACCAACTGATCCTGAAGTCGTGGTGGAAGATGATTATTCTGATGAAGAGATCGATGTCGATGAGCTCGAGAGGAGGATGTGGAGGGACAAGATGCGTCTCAAACGCCTTAAAGAGCAAAGCAAGGTTAAGGAAGGGATTGATATTGTGAAGCAGCGACAGTCTCAAGACCAGGCTAGGAGGAAGAAGATGTCGAGGGCACATGATGGGATCTTGAAGTATATGTTGAAGATTATGGAAGTTTGTAATGCTCAAGGTTTTGTATATGGAATAATTCCTGAGAAGGGAAAACCTGTAACTGGTGCATCAGATAATCTGCGAGAATGGTGGAAAGACAAGGTCAGATTTGATAGAAACGGACCGGCTGCCATAGCCAAGTACCAGGCAGACAATGCAATTCCCGGACGAAACGATGGGTGTAATTCAATTGGTCCAACCCCGCACACCTTGCAGGAACTTCAGGATACCACCCTAGGATCTCTTTTATCAGCTCTGATGCAGCACTGTGACCCTCCTCAAAGAAGATTTCCATTGGAGAAAGGTGTTCCTCCGCCATGGTGGCCTACTGGAGTCGAGGAATGGTGGCCTCAGCTCGGGTTGCCTAAGGACCAAGGTCCTCCACCGTACAAGAAGCCTCATGACTTGAAGAAAGCGTGGAAAGTCGGTGTTTTGACTGCAGTCATCAAGCATATGTCCCCTGATATAGCCAAGATCCGCAAGCTTGTTAGACAGTCCAAGTGTTTGCAGGACAAGATGACCGCCAAGGAGAGTGCGACATGGCTTGCTATTATCAACCAGGAGGAGATCTTGGCCCGGGAGCTTTATCCCGACTCTTGCCCGCCTCTGTCTTCCGGTGGGGGTAGTGGATCATTGGTCATTAACGATTGCAGCGAATACGATGTAGAAGGCGCTGAGGAGGAACCGAGCTTTGATGTTCAAGATCGAAAACCTGATAACCATGGCTCATTCAACTTGGGAATGGACAGAATGAGAGAACGGGTGCCCCTTCGACAACCACCTTATGCAATCAAAGGAGAGGTTCCTGCAAACTTGGATTTTATGCGAAAGAGGAAACCGACCAGCGATCTGAATATGATGATGGATCAGAAGATCTATACTTGTGAGTTCCTCCAGTGTCCTTATAGCGAACTTCGTCTCGGGTTTAATGACAGGACATCCAGAGACAATCATCAGTTGACCTGTACATATAGAACTTCTTCAGAATTCAGTGGCTCAAGTTTTCATGTCAACGAGGTTAAACCGGTTATCTTCCCTCAGTCGTTTGCCCCACCCAAGTCAGCTCCACCGCCGGTCAGCTCAGTTCCATCATCCTTCGACCTGTCTGCTTTAGGCGTTCCAGAAGATGGCCAAAAGCTGATCAGTGAGCTCATGTCTATCTATGACACCAACATCCAAGGCAACAAGAACAACGTAAACACCGGTAATGGTGCCATCACGGAAAACCAAAATCTTTCTCAGTTAAAGATCCAACCTCAACAAGACGAATACTTCCGCAATCAAGGTCTAATGATCGAGGGAAACTTCTTCGAGGGTTCAAATGTTTCGAGCAGCCATCAAATGTTCACAAGAGATGAAGGCCAATTCGACCGGTTTAAGCCAATGAATTCACCTTTCGAAAACAACCACCATCAGCACAACAATAACAACAACAACAATTTCCACTTAATGTTTGGCTCTCCATTTGATTTGTCGACCTTCGACTACAAAGAAGAAGTACCCGGAGTAGCAGCCATCGATACACTGTCGAAACAGCAGGACATTACATTATGGTATCATTGA 1884 46.39 MMMMFNEMGFCDDMDFLSAPIVEGDSGAPPTDPEVVVEDDYSDEEIDVDELERRMWRDKMRLKRLKEQSKVKEGIDIVKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGVEEWWPQLGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEILARELYPDSCPPLSSGGGSGSLVINDCSEYDVEGAEEEPSFDVQDRKPDNHGSFNLGMDRMRERVPLRQPPYAIKGEVPANLDFMRKRKPTSDLNMMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLTCTYRTSSEFSGSSFHVNEVKPVIFPQSFAPPKSAPPPVSSVPSSFDLSALGVPEDGQKLISELMSIYDTNIQGNKNNVNTGNGAITENQNLSQLKIQPQQDEYFRNQGLMIEGNFFEGSNVSSSHQMFTRDEGQFDRFKPMNSPFENNHHQHNNNNNNNFHLMFGSPFDLSTFDYKEEVPGVAAIDTLSKQQDITLWYH 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28485900 28487783 + CmPI595203_03g020140.1 Cmu03g2014 412800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g2014 627 Coils Coil 48 68 - -
Cmu03g2014 627 FunFam Ethylene insensitive 3-like 1 81 159 - -
Cmu03g2014 627 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cmu03g2014 627 MobiDBLite consensus disorder prediction 336 354 - -
Cmu03g2014 627 MobiDBLite consensus disorder prediction 334 354 - -
Cmu03g2014 627 Gene3D - 81 158 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cmu03g2014 627 Gene3D - 173 306 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cmu03g2014 627 FunFam Ethylene insensitive 3-like 1 169 306 - -
Cmu03g2014 627 Pfam Ethylene insensitive 3, DNA-binding domain 49 296 IPR047091 GO:0003700(InterPro)
Cmu03g2014 627 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 3 615 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g2014 K14514 - - csv:101206055 1149.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2014 Cmu-Chr3:28485900 Cmu08g0805 Cmu-Chr8:20333249 1.80E-197 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g878 . . . . . . . . . Cmo11g00819 . . . . . . Cpe18g00129 . . . . . . . . . . . . . . . . Cone11ag0985 Cone18ag0594 Lsi06g00444 . . . . . . . . . . . . . . Cma11g00814 . . . . Cpe04g00955 . . . . . . . Cla03g01353 Cam03g1432 Cec03g1468 Cco03g1460 Clacu03g1455 Cmu03g2014 Cre03g1685 . . . Cme02g00432
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu03g2014 . 2 626 EIL Transcription Factor Family AT2G27050 58.2 1.2e-190 663.3
Cmu08g0805 . 8 495 EIL Transcription Factor Family AT2G27050 62.8 1.4e-167 586.6
Cmu03g1950 . 15 310 EIL Transcription Factor Family AT2G27050 61.8 7.4e-100 361.7
Cmu03g1950 . 2 562 EIL Transcription Factor Family AT1G73730 55.7 1.1e-153 540.4
Cmu03g2014 . 36 334 EIL Transcription Factor Family AT1G73730 62.5 7.3e-105 378.3
Cmu08g0805 . 40 335 EIL Transcription Factor Family AT1G73730 61.3 2.3e-103 373.2
Cmu07g0957 . 25 273 EIL Transcription Factor Family AT1G73730 55.5 1.1e-73 274.6
Cmu03g2014 . 3 626 EIL Transcription Factor Family AT3G20770 62.5 1.3e-211 733.0
Cmu08g0805 . 7 493 EIL Transcription Factor Family AT3G20770 63.7 2.3e-171 599.4
Cmu03g1950 . 9 276 EIL Transcription Factor Family AT3G20770 68.5 4.1e-104 375.9
Cmu07g0957 . 19 364 EIL Transcription Factor Family AT5G65100 50.6 2.5e-97 353.2
Cmu03g1950 . 19 272 EIL Transcription Factor Family AT5G65100 50.5 2.2e-72 270.4
Cmu07g0957 . 25 364 EIL Transcription Factor Family AT5G10120 55.0 1.9e-98 356.7
Cmu03g1950 . 11 274 EIL Transcription Factor Family AT5G10120 53.9 2.3e-75 280.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5940 PF04873 EIN3 3.50E-129 No_clan Cmu TF