Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g2088 ATGGCCGCAGCTCAGCTCACTGGGTCCTTAATTTCTGCGAGGAATTTGCCTTCTTTCAATGGCCTTCGTCCTTCTGCCGTGAAATTCTCTCCTTCGGTTGCCCATGTTAGAGTCGGGGGTTTGGCCAACAGATCCTTCACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCATTGGGTGATAGAGTGTTGGTGAAGTTAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACAGCTCAGTCGAAACCCCAAGGAGGGGAGGTCGTTGCAGTTGGAGAAGGCAAGACAATTGGAAATACCAAAGTGGAAGCAAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGTTAGAATTCAATGGTTCAAAGCATCTTATTCTCAAGGAAGATGATATAGTTGGTATCCTAGAGACAGATGATGCGAAAGATCTTCAGCCCCTAAACGACCGGGTCTTGATCAAGGTAGCTGAGGCTGAGGAAAAAACAGCAGGAGGTTTATTGTTGACAGAGGCAACCAAAGAGAAGCCTTCCATCGGAACGGTGATCGCAGTTGGTCCTGGTCCTTTGGACGAGGAGGGCAAAAGGAAACCGCTATCTATCGCAGTGGGAAACAACGTGATGTACTCAAAGTACGCCGGGAATGAGTTCAAAGGCAAAGATGGCTCTGATTACATCGCCTTGAGGGCTTCAGACGGGGGAATTGAGATGGATTTTGAGAGACGTAGAAGAGAATTGAAAAAGGCAACTGAGATGGAAATTTCGACCATCGCCGTTCTCCTTCTCCGCCGGCGACATAGAGCCCCTGCCTTCTCTGCCTCTCCAATTTCTCCGACGACTTATCTCTCGTTTGCTTCCACTTTCCTATTGAAACAATCGATGGGTTCAGACGAGGAGGTTGTGGAAATTAGTAGCTTGGAAAGGGGTTTATTGTCAGAATGCAGTTCTGATTTGGAACCTGAAAGTGATGATGAGCCTGTGTTGTTTGCAGCTTCCTTCCAAGAGATGGAAGACAACTTTGTAAAGTATCATACAGCACAATGGGTCCTTTACTCCTTGCTTTTGATTTTAGCGTGGGGGATTGGGTTGTTGATGCTGCTTTATCTACCAGTAAGAAGATACATTCTGCGGAAAGATATTCAATCGAAGAAGCTTTATCTTACACCGAATTCCATAATCTACAAGGTTACAAGACCTGTGCCTTTTCCATGTTTTGGAGTATTGAAGAAAGAGAAGCATGTTTTGTTGCATTCAGTGGCAGACATTATAATTGAACAAGGATATTTAGAGTCTCTCTATGGAGTTTACTCTATTAGGATAGAGAATGCTGGCGTGAGACGACCACCTGGTGATGATGTTCAAATTCAAGGAATTACAGATCCAATTGCATTTAAAAAGGCTGTTCTAATGCGTCTTTCTGGTATGAGAGATGATGGCAACTCTTCTCAAATTTCTACAATTGAAGAAGTTTTAAATACAAAGTCATCCCCATCTAAATCTCTAAAGTATGACCCGTATTTATATTCGGGGGAACAAGTACTTCAGAAAGTAGAGGAGGTTGGAAGTTCTGTGAAGAGAGTTCAAGCTTTGATCGAAGAGCAACGGTCACAATTCATGTATAGTACGAATAAGCATATCACTGATTATAGTACCAATAAGCACATCACTGATTCTGGTCCTGTCAAAAAGGGAGTAAATGTCTATATGATGAAATGGGATTCAGATCATGGATTGATGATAATCAACCATTATGACTATAGAGGCAAAATTAATGTAAAGGATATAAGCCTGAGAAACTCGGTAGCTTGTTTGGGAATGTTTGGCAAGACTGTTGTCTGTTCTTTGGCTCCAAATTTGTTCATAGGTGCTTCTCTTTTAGATGCTATGATTGTGATCAGCTCCAAAATGGTACAAGACCAGTCCCAATTTCATGAGGATTGA 1992 42.92 MAAAQLTGSLISARNLPSFNGLRPSAVKFSPSVAHVRVGGLANRSFTGLVVRAATVVAPKYTSIKPLGDRVLVKLKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGKRKPLSIAVGNNVMYSKYAGNEFKGKDGSDYIALRASDGGIEMDFERRRRELKKATEMEISTIAVLLLRRRHRAPAFSASPISPTTYLSFASTFLLKQSMGSDEEVVEISSLERGLLSECSSDLEPESDDEPVLFAASFQEMEDNFVKYHTAQWVLYSLLLILAWGIGLLMLLYLPVRRYILRKDIQSKKLYLTPNSIIYKVTRPVPFPCFGVLKKEKHVLLHSVADIIIEQGYLESLYGVYSIRIENAGVRRPPGDDVQIQGITDPIAFKKAVLMRLSGMRDDGNSSQISTIEEVLNTKSSPSKSLKYDPYLYSGEQVLQKVEEVGSSVKRVQALIEEQRSQFMYSTNKHITDYSTNKHITDSGPVKKGVNVYMMKWDSDHGLMIINHYDYRGKINVKDISLRNSVACLGMFGKTVVCSLAPNLFIGASLLDAMIVISSKMVQDQSQFHED 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29307136 29315907 - CmPI595203_03g020880.1 Cmu03g2088 412874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g2088 663 CDD cpn10 162 249 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cmu03g2088 663 SUPERFAMILY GroES-like 161 249 IPR011032 -
Cmu03g2088 663 PRINTS 10kDa chaperonin signature 64 79 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cmu03g2088 663 PRINTS 10kDa chaperonin signature 120 132 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cmu03g2088 663 PRINTS 10kDa chaperonin signature 141 154 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cmu03g2088 663 PRINTS 10kDa chaperonin signature 86 107 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cmu03g2088 663 SUPERFAMILY GroES-like 62 155 IPR011032 -
Cmu03g2088 663 SMART Cpn10_2 161 253 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cmu03g2088 663 SMART Cpn10_2 63 154 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cmu03g2088 663 Gene3D GroES chaperonin 158 250 IPR037124 GO:0006457(InterPro)
Cmu03g2088 663 Gene3D GroES chaperonin 57 157 IPR037124 GO:0006457(InterPro)
Cmu03g2088 663 Hamap Co-chaperonin GroES [groES]. 63 155 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cmu03g2088 663 FunFam 20 kDa chaperonin, chloroplastic 57 156 - -
Cmu03g2088 663 Pfam Chaperonin 10 Kd subunit 162 249 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cmu03g2088 663 Pfam Chaperonin 10 Kd subunit 64 153 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cmu03g2088 663 Hamap Co-chaperonin GroES [groES]. 161 255 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cmu03g2088 663 ProSitePatterns Chaperonins cpn10 signature. 162 186 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
Cmu03g2088 663 PANTHER EXPRESSED PROTEIN 311 554 - -
Cmu03g2088 663 FunFam 10 kDa chaperonin 160 250 - -
Cmu03g2088 663 CDD cpn10 63 154 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Cmu03g2088 663 ProSitePatterns Chaperonins cpn10 signature. 64 88 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2088 Cmu-Chr3:29307136 Cmu06g0003 Cmu-Chr6:70448 6.80E-41 dispersed
Cmu03g2088 Cmu-Chr3:29307136 Cmu05g0312 Cmu-Chr5:2671367 7.10E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g2088 K04078 - csv:101212396 454.521