Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu03g2089 | ATGACGAAGCCGTCGTCCCCTCAAAAATCCTCCGCCGCCGCCGTTGACACTTCCGATTCACGGTACAAGGGAGTACGGCGCCGGAAATGGGGCAAATGGGTTTCCGAAATCCGTCTCCCCAACAGCCGCGAGCGGATCTGGTTAGGTTCTTATGATTCAGCCGAGAAAGCGGCGCGTGCATTCGACGCGGCTCTATTTTGCTTACGTGGCCGTTCCGCTCGTTTCAATTTCCCAGATAACCCACCGGAAATTGCCGGTGCTAGTTTGCTCTCCCGAGCAGAGATTCAATCCGTCGCTGCCCAATTCGCTAACTCCGACCCACCACCCTCGTCGGAATGTACACGACCCGCCGTCGATTCGCCGTCGGTGGTTTCCGAAGTGACTACCTCTGTAATTGAATGTGATGAAAGATCGCCGTTTTTGGATCTTCACACCGCCATGGGATCGGGAAATTACGGGTCGGATTTCGGGTTATTTCCGGAATATAATCCGTTTTATAATGAAATGTTTATTAATGGTTCTTCTTCTTCAACAACAGCTCCTTGTTTTGATTATGGAGATGAGAATTTTGACGCCATCACCACTCATCAAGATTCATCATTCCTCTGGAATTTCTGA | 618 | 50.32 | MTKPSSPQKSSAAAVDTSDSRYKGVRRRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALFCLRGRSARFNFPDNPPEIAGASLLSRAEIQSVAAQFANSDPPPSSECTRPAVDSPSVVSEVTTSVIECDERSPFLDLHTAMGSGNYGSDFGLFPEYNPFYNEMFINGSSSSTTAPCFDYGDENFDAITTHQDSSFLWNF | 205 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 29328537 | 29329154 | + | CmPI595203_03g020890.1 | Cmu03g2089 | 412875 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu03g2089 | 205 | SUPERFAMILY | DNA-binding domain | 20 | 80 | IPR016177 | GO:0003677(InterPro) | |
Cmu03g2089 | 205 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cmu03g2089 | 205 | Pfam | AP2 domain | 20 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu03g2089 | 205 | PRINTS | Ethylene responsive element binding protein signature | 22 | 33 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu03g2089 | 205 | PRINTS | Ethylene responsive element binding protein signature | 44 | 60 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu03g2089 | 205 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 12 | 126 | IPR051032 | - | |
Cmu03g2089 | 205 | ProSiteProfiles | AP2/ERF domain profile. | 21 | 78 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu03g2089 | 205 | SMART | rav1_2 | 21 | 84 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu03g2089 | 205 | FunFam | Ethylene-responsive transcription factor 2 | 20 | 79 | - | - | |
Cmu03g2089 | 205 | CDD | AP2 | 20 | 80 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu03g2089 | 205 | Gene3D | AP2/ERF domain | 20 | 79 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu03g2089 | 205 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu03g2089 | Cmu-Chr3:29328537 | Cmu08g0506 | Cmu-Chr8:16811863 | 3.10E-21 | dispersed | |
Cmu05g1629 | Cmu-Chr5:26116448 | Cmu03g2089 | Cmu-Chr3:29328537 | 4.10E-31 | transposed | |
Cmu08g0919 | Cmu-Chr8:21466814 | Cmu03g2089 | Cmu-Chr3:29328537 | 1.90E-32 | transposed | |
Cmu03g2089 | Cmu-Chr3:29328537 | Cmu09g0127 | Cmu-Chr9:1446226 | 6.80E-16 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5943 | PF00847 | AP2 | 8.10E-13 | CL0081 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu03g2089 | - | - | - | 0.0 |