Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g2089 ATGACGAAGCCGTCGTCCCCTCAAAAATCCTCCGCCGCCGCCGTTGACACTTCCGATTCACGGTACAAGGGAGTACGGCGCCGGAAATGGGGCAAATGGGTTTCCGAAATCCGTCTCCCCAACAGCCGCGAGCGGATCTGGTTAGGTTCTTATGATTCAGCCGAGAAAGCGGCGCGTGCATTCGACGCGGCTCTATTTTGCTTACGTGGCCGTTCCGCTCGTTTCAATTTCCCAGATAACCCACCGGAAATTGCCGGTGCTAGTTTGCTCTCCCGAGCAGAGATTCAATCCGTCGCTGCCCAATTCGCTAACTCCGACCCACCACCCTCGTCGGAATGTACACGACCCGCCGTCGATTCGCCGTCGGTGGTTTCCGAAGTGACTACCTCTGTAATTGAATGTGATGAAAGATCGCCGTTTTTGGATCTTCACACCGCCATGGGATCGGGAAATTACGGGTCGGATTTCGGGTTATTTCCGGAATATAATCCGTTTTATAATGAAATGTTTATTAATGGTTCTTCTTCTTCAACAACAGCTCCTTGTTTTGATTATGGAGATGAGAATTTTGACGCCATCACCACTCATCAAGATTCATCATTCCTCTGGAATTTCTGA 618 50.32 MTKPSSPQKSSAAAVDTSDSRYKGVRRRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALFCLRGRSARFNFPDNPPEIAGASLLSRAEIQSVAAQFANSDPPPSSECTRPAVDSPSVVSEVTTSVIECDERSPFLDLHTAMGSGNYGSDFGLFPEYNPFYNEMFINGSSSSTTAPCFDYGDENFDAITTHQDSSFLWNF 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29328537 29329154 + CmPI595203_03g020890.1 Cmu03g2089 412875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g2089 205 SUPERFAMILY DNA-binding domain 20 80 IPR016177 GO:0003677(InterPro)
Cmu03g2089 205 MobiDBLite consensus disorder prediction 1 17 - -
Cmu03g2089 205 Pfam AP2 domain 20 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g2089 205 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g2089 205 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g2089 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 126 IPR051032 -
Cmu03g2089 205 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g2089 205 SMART rav1_2 21 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g2089 205 FunFam Ethylene-responsive transcription factor 2 20 79 - -
Cmu03g2089 205 CDD AP2 20 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g2089 205 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu03g2089 205 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2089 Cmu-Chr3:29328537 Cmu08g0506 Cmu-Chr8:16811863 3.10E-21 dispersed
Cmu05g1629 Cmu-Chr5:26116448 Cmu03g2089 Cmu-Chr3:29328537 4.10E-31 transposed
Cmu08g0919 Cmu-Chr8:21466814 Cmu03g2089 Cmu-Chr3:29328537 1.90E-32 transposed
Cmu03g2089 Cmu-Chr3:29328537 Cmu09g0127 Cmu-Chr9:1446226 6.80E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5943 PF00847 AP2 8.10E-13 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g2089 - - - 0.0