Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g2099 ATGGCTTTGGATTCGAACAATGGCGGCGAAGTTGGAGTGGATAACTCTCTCCAGTCCATCTGTTACAAGCGGGGCTCCTTGCGGCTGCTCGATCAGAGGAAACTCCCTTTGGAAACTGTCTACTTGGATATCAAGGACGCAACAGATGGATGGCACGCAATAAGGGATATGGTAGTACGCGGGGCACCTGCCATTGCTATTGCAGCAGCCCTTGCTTTGGCAGCAGAAGTGTACAACTCAGACCCTTGTAATGGGACGCCCAACGATGCAGCTTTGTTCATTGCAGAGAAATTGGACTACTTAGTCTCCAGCCGGCCAACTGCAGTTAATCTTGGCGATGCTGCTATAAAACTTAAAGAAATTGTATCTGGTGCCGCTGCAATTTCTTCTGAAGCCAAGAGTGTCTTCCAAGCATATATAGAGGCCGCCGAAGCAATGCTGGAGGATGATGTTGCTTCAAACAAAGCCATTGGGTCCTATGGAGCAACTTATATCCGTGATCAACAAAAATCGTTGGAGAAGTTTTCCGTTCTAACACACTGCAATACGGGCAGTCTAGCAACAGCTGGATATGGTACTGCCCTTGGTGTTATTCGTGCACTTCACTCTGCTGGTGTGTTAGAAAGGGCATACTGTACAGAAACGCGGCCCTTTAATCAAGGATCTCGACTCACAGCCTATGAGTTGGTCCATGAAAAGATACCTTCTACTCTGATAGCTGATTCTGCTGCTGCGGCCTTAATGAAATTTGGAAGAGTGAATGCTGTTGTAGTTGGGGCAGATCGTGTAGCTGCAAATGGTGATACTGCAAATAAGATTGGAACCTATAGTCTTGCATTGTGTGCAATGCATCACAATATTCCATTCTTTGTGGCTGCACCATTGACTTCAATAGACTTATCCCTTTCTTCTGGAGAAGAAATCGTTATAGAGGAAAGGTCTCCCAAAGAGTTGTTGAACTCCCGTGGAGGTCTCGGTGAGCAAGTCGCAGCATCTGGTATCGCTGTCTGGAACCCTGCTTTCGATGTTACTCCTGCTCATCTGATTTCTGGAATCATAACGGAAAAGGGAGTCATCACGAAAGTGGCGGGTTCTGAATCTTTCAACATAAAGGAGTTTGTTCAAAAGACGGAGGGGACTCATGCATAG 1149 46.65 MALDSNNGGEVGVDNSLQSICYKRGSLRLLDQRKLPLETVYLDIKDATDGWHAIRDMVVRGAPAIAIAAALALAAEVYNSDPCNGTPNDAALFIAEKLDYLVSSRPTAVNLGDAAIKLKEIVSGAAAISSEAKSVFQAYIEAAEAMLEDDVASNKAIGSYGATYIRDQQKSLEKFSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPSTLIADSAAAALMKFGRVNAVVVGADRVAANGDTANKIGTYSLALCAMHHNIPFFVAAPLTSIDLSLSSGEEIVIEERSPKELLNSRGGLGEQVAASGIAVWNPAFDVTPAHLISGIITEKGVITKVAGSESFNIKEFVQKTEGTHA 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29423633 29426839 + CmPI595203_03g020990.1 Cmu03g2099 412885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g2099 382 Gene3D - 173 376 IPR042529 -
Cmu03g2099 382 Gene3D - 15 172 IPR027363 -
Cmu03g2099 382 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 44 361 IPR011559 GO:0044249(InterPro)
Cmu03g2099 382 SUPERFAMILY NagB/RpiA/CoA transferase-like 16 361 IPR037171 -
Cmu03g2099 382 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 17 370 IPR005251 -
Cmu03g2099 382 FunFam Methylthioribose-1-phosphate isomerase 15 207 - -
Cmu03g2099 382 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 15 375 - GO:0019509(PANTHER)|GO:0046523(PANTHER)
Cmu03g2099 382 Pfam Initiation factor 2 subunit family 59 360 IPR000649 GO:0044237(InterPro)
Cmu03g2099 382 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 18 361 IPR005251 -
Cmu03g2099 382 FunFam Methylthioribose-1-phosphate isomerase 173 371 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2099 Cmu-Chr3:29423633 Cmu09g0676 Cmu-Chr9:6277008 1.70E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g2099 K08963 - csv:101210526 681.019