Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu03g2099 | ATGGCTTTGGATTCGAACAATGGCGGCGAAGTTGGAGTGGATAACTCTCTCCAGTCCATCTGTTACAAGCGGGGCTCCTTGCGGCTGCTCGATCAGAGGAAACTCCCTTTGGAAACTGTCTACTTGGATATCAAGGACGCAACAGATGGATGGCACGCAATAAGGGATATGGTAGTACGCGGGGCACCTGCCATTGCTATTGCAGCAGCCCTTGCTTTGGCAGCAGAAGTGTACAACTCAGACCCTTGTAATGGGACGCCCAACGATGCAGCTTTGTTCATTGCAGAGAAATTGGACTACTTAGTCTCCAGCCGGCCAACTGCAGTTAATCTTGGCGATGCTGCTATAAAACTTAAAGAAATTGTATCTGGTGCCGCTGCAATTTCTTCTGAAGCCAAGAGTGTCTTCCAAGCATATATAGAGGCCGCCGAAGCAATGCTGGAGGATGATGTTGCTTCAAACAAAGCCATTGGGTCCTATGGAGCAACTTATATCCGTGATCAACAAAAATCGTTGGAGAAGTTTTCCGTTCTAACACACTGCAATACGGGCAGTCTAGCAACAGCTGGATATGGTACTGCCCTTGGTGTTATTCGTGCACTTCACTCTGCTGGTGTGTTAGAAAGGGCATACTGTACAGAAACGCGGCCCTTTAATCAAGGATCTCGACTCACAGCCTATGAGTTGGTCCATGAAAAGATACCTTCTACTCTGATAGCTGATTCTGCTGCTGCGGCCTTAATGAAATTTGGAAGAGTGAATGCTGTTGTAGTTGGGGCAGATCGTGTAGCTGCAAATGGTGATACTGCAAATAAGATTGGAACCTATAGTCTTGCATTGTGTGCAATGCATCACAATATTCCATTCTTTGTGGCTGCACCATTGACTTCAATAGACTTATCCCTTTCTTCTGGAGAAGAAATCGTTATAGAGGAAAGGTCTCCCAAAGAGTTGTTGAACTCCCGTGGAGGTCTCGGTGAGCAAGTCGCAGCATCTGGTATCGCTGTCTGGAACCCTGCTTTCGATGTTACTCCTGCTCATCTGATTTCTGGAATCATAACGGAAAAGGGAGTCATCACGAAAGTGGCGGGTTCTGAATCTTTCAACATAAAGGAGTTTGTTCAAAAGACGGAGGGGACTCATGCATAG | 1149 | 46.65 | MALDSNNGGEVGVDNSLQSICYKRGSLRLLDQRKLPLETVYLDIKDATDGWHAIRDMVVRGAPAIAIAAALALAAEVYNSDPCNGTPNDAALFIAEKLDYLVSSRPTAVNLGDAAIKLKEIVSGAAAISSEAKSVFQAYIEAAEAMLEDDVASNKAIGSYGATYIRDQQKSLEKFSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPSTLIADSAAAALMKFGRVNAVVVGADRVAANGDTANKIGTYSLALCAMHHNIPFFVAAPLTSIDLSLSSGEEIVIEERSPKELLNSRGGLGEQVAASGIAVWNPAFDVTPAHLISGIITEKGVITKVAGSESFNIKEFVQKTEGTHA | 382 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 29423633 | 29426839 | + | CmPI595203_03g020990.1 | Cmu03g2099 | 412885 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu03g2099 | 382 | Gene3D | - | 173 | 376 | IPR042529 | - | |
Cmu03g2099 | 382 | Gene3D | - | 15 | 172 | IPR027363 | - | |
Cmu03g2099 | 382 | NCBIfam | S-methyl-5-thioribose-1-phosphate isomerase | 44 | 361 | IPR011559 | GO:0044249(InterPro) | |
Cmu03g2099 | 382 | SUPERFAMILY | NagB/RpiA/CoA transferase-like | 16 | 361 | IPR037171 | - | |
Cmu03g2099 | 382 | Hamap | Putative methylthioribose-1-phosphate isomerase [mtnA]. | 17 | 370 | IPR005251 | - | |
Cmu03g2099 | 382 | FunFam | Methylthioribose-1-phosphate isomerase | 15 | 207 | - | - | |
Cmu03g2099 | 382 | PANTHER | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE | 15 | 375 | - | GO:0019509(PANTHER)|GO:0046523(PANTHER) | |
Cmu03g2099 | 382 | Pfam | Initiation factor 2 subunit family | 59 | 360 | IPR000649 | GO:0044237(InterPro) | |
Cmu03g2099 | 382 | NCBIfam | S-methyl-5-thioribose-1-phosphate isomerase | 18 | 361 | IPR005251 | - | |
Cmu03g2099 | 382 | FunFam | Methylthioribose-1-phosphate isomerase | 173 | 371 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu03g2099 | Cmu-Chr3:29423633 | Cmu09g0676 | Cmu-Chr9:6277008 | 1.70E-07 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu03g2099 | K08963 | - | csv:101210526 | 681.019 |