Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g2116 ATGAGCGCCAGAAGTATGTTTCCCTTCACATCATCTCAGTGGCAGGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCTGGCATTCCTATACCTCCTGATCTTCTTTTCGGTATTAAAAGAAGTACCTTGGACTCTACTTTCACTTCTAAGTTCTTCCCCCACCATCCTCAACATGTTGGATGGAACTATTTGCAGATGAGTTTGGGGAGGAAAATAGACCCAGAACCAGGGAGGTGTAGGAGAACTGATGGGAAAAAGTGGAGATGCTCAAAAGAAGCATATCCAGATTCGAAATACTGTGAGAGACACATGCATAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACAACAGCAACAAACGACTTAAACCACCACTCAAATCCAACATTTTCTTCCTTAAAGAACAACTCGTCGTTACTCTCCTATCGGCCCTTCCCCGGTCATCGAATATCTTCAACTCCTAATGGGAATGGCATATCAACCAAAGACACCAATACCCTCTTGCTTCTGGAACCTGGTTCTTACTCGGACAGAAGCCCAGATTACAGAAGTAGGTACACTTATGGGCTAAAGGAGGAAGTGGATGAACATGTTTTCTTCTCACAAGAACCATCTGAAGCTACTGGGAGAGCTGATTACTCTGCTTCGTCCATAGCTAATTCTCTGCAACTGACACCACTAACGATGAGTTGTTCTTCTCTATACCCAAAACAGAGCAATAGCTCCTCTTTGCAGAGTGATCAATCATGTTATCAGCTTCATCAGAGCCTCAAAGACCCTTTGACGCAACAAAAGAGAGATGAATCACAGAAGACCGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGAAAGAGGATCATGGCTTGAGTTCGATGAAAAATCGTCAAATACTAGCTCAGTTTCCACCACTCGGCTCTCAATTTCCATTCCCACAGCTTCCAACGACTTACCCATTTTCAGATCCAAAAACCCTTAG 999 43.24 MSARSMFPFTSSQWQELEHQALIFKYMVSGIPIPPDLLFGIKRSTLDSTFTSKFFPHHPQHVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDLNHHSNPTFSSLKNNSSLLSYRPFPGHRISSTPNGNGISTKDTNTLLLLEPGSYSDRSPDYRSRYTYGLKEEVDEHVFFSQEPSEATGRADYSASSIANSLQLTPLTMSCSSLYPKQSNSSSLQSDQSCYQLHQSLKDPLTQQKRDESQKTVHRFFDEWPPKERGSWLEFDEKSSNTSSVSTTRLSISIPTASNDLPIFRSKNP 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29587206 29588362 + CmPI595203_03g021160.1 Cmu03g2116 412902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g2116 332 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu03g2116 332 PANTHER GROWTH-REGULATING FACTOR 5 2 319 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Cmu03g2116 332 Pfam WRC 77 118 IPR014977 -
Cmu03g2116 332 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Cmu03g2116 332 Pfam QLQ 8 41 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu03g2116 332 SMART QLQ_2 7 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2116 Cmu-Chr3:29587206 Cmu08g1608 Cmu-Chr8:27751258 1.50E-33 dispersed
Cmu02g0784 Cmu-Chr2:8880949 Cmu03g2116 Cmu-Chr3:29587206 1.70E-48 transposed
Cmu10g2647 Cmu-Chr10:33261786 Cmu03g2116 Cmu-Chr3:29587206 9.00E-31 transposed
Cmu03g2116 Cmu-Chr3:29587206 Cmu07g1384 Cmu-Chr7:29173682 4.90E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5946 PF08879 WRC 1.10E-20 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g2116 - - - 0.0