Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g2126 ATGGCCAACTCTGAATTTCTCTGCTCCGCAGCTCTCTCCAAAACCGATTTTGTTCCTCAATCAAAATCCTTTTCCTCTGTTTCGACCTCCGACCATTGGGTCAAGGCTGCCAACGCTCTCAGCCACACCCATTTTGAGGAGGTTTATCGCATGTTGTCGGAGTTTCAAGAGGCTCAAACTGTTGATATCGAAGGCACCACCCTCACCGTCGCTCAGGTGACCGCCGTTGCTCGTCGAAGCGATGTCAAAGTCGTCCTGAATGAAGCTGTGGCACATGATCGTGTGGCCAACAGTGCAAAATGGATTGCTGAGAAAATCTCTAAGGGAATTGATATATATGGAGTTACCACTGGCTTTGGTGCCACCTCCCACCGGCGTACGACCAAACTGGCCGATCTCCAAACAGAACTCATTAGATTCCTCAATGCCGGAGTCATCGGAAAAGACAATCTTCCATCTACCTACTCAAAGGCGGCCATGCTTGTCAGAACAAACACATTGATGCAAGGCTACTCAGGCATTCGTTGGAAAATTCTCGAGGCTGTGGTGAAGCTCATGAATGAGAACTTGATCCCTAAATTGCCTTTGAGAGGGACAATCACAGCTTCTGGAGATCTTGTTCCACTGTCTTATATTGCTGGTGTTATCACTGGAAGGCATAATTCCAAGGTTACCACCATTGAAGGCGATGAGATTACTGCCATAGAAGCTCTCAAGCGAGCTGGAATTGAAGGCCCATTTGAGCTTCAAGCAAAGGAAGGTTTAGCTCTTGTCAATGGAACCGCTGTTGGGTCGGCCGTTGCTGCCACAGTTTGCTATGACGCCAACATTTTGGCTCTTTTAGCTGTCGTCCTCTCTGCTTTGTTCTGTGAAGCCATGCTCGGGAAGCCAGAATTTGCAGACCCATTGACCCATAAGCTCAAGCACCACCCTGGCCAGATTGAATCCGCCGCAGCCATGGAGTTTCTCTTGGACCAAAGCGACTTTATGAAAGAAGCAAAAAGCCGCAATGAAAATGACCCATTGACAAAGCCAAAACAAGATCGTTATGCACTTCGAACATCTCCACAATGGCTCGGACCCCAAATCGAAGTCATTCGAATGGCAACCCATTCGATTGAAAGGGAAATCAACTCTGTGAATGATAACCCATTAATCGACATCGATCGAGATCTAGCTCGACACGGAGGAAACTTTCAAGGAACCCCAATTGGAGTCTCCATGGATAATCTCCGAATCGCCATTGCTGCAATTGGAAAGCTAATGTTTGCCCAATTCTCGGAACTCGTCTGTGATCATTACAACAATGGATTACCATCTAATTTGAGCGGCGGGCCAAACCCTAGCTTGGACTACGGCTTCAAAGGAGCGGAAATCGCCATGGCTGCTTATTGTTCTGAGCTTCAATACTTAGCAAACCCTGTCACAACCCATGTCCAAAGTGCAGAACAACATAATCAAGATGTAAACTCTCTAGGTCTAATCTCAGCCAGAAAATCCGCCGAAGCCATTGAAATTCTCAAGCTCATGTCAGCTACATACATGGTGGCGCTTTGCCAGGCAATCGATTTAAGACAATACGAAGAAAATATGAGGGAAGTAGTGAAAAATGCTCTTCTACAAACCATTAAGAAAACCTTATACGTTGCAGAGTATGGATCTCTTCTCGAATCGCGATTCTGCGAGAAAGACCTATTACAAGTAATCGAGCGCGAGGCGATCTTCTCCTACATCGACGATCCAACCAACACATCCTACACTCTAATCCCAAAATTACTGGAAGTTTTAGTCGAAAAAGCACTGAAAGGAGTTACAACAGGCAAAAGCGAGAATGAAAACGAAACAGGGATTGCCATTTTCAAGCAAATCCCAGGGTTTCTAGAGGAATTAAAAGCGAAATTGGAGAAAGATGTCGAAAATGCGAGAGAGAGATTCGAGAATGGTGATTTCGAAGTGGAAAATAGAATCAAGAAATGCAGCACTTACCCGATCTACCGATTCGTGAGGTGTGAAGTGGGGACTCAACTGTTGAGTGGGGCGAAGAAAGTGAGCCCTGGAGAAGATATTGAGAAAGTGGTGGAAGCCATTGATGAAGGGAAGCTTGGAAATGCTGTGATTCAGTGTTTGAAGAATTAG 2136 45.88 MANSEFLCSAALSKTDFVPQSKSFSSVSTSDHWVKAANALSHTHFEEVYRMLSEFQEAQTVDIEGTTLTVAQVTAVARRSDVKVVLNEAVAHDRVANSAKWIAEKISKGIDIYGVTTGFGATSHRRTTKLADLQTELIRFLNAGVIGKDNLPSTYSKAAMLVRTNTLMQGYSGIRWKILEAVVKLMNENLIPKLPLRGTITASGDLVPLSYIAGVITGRHNSKVTTIEGDEITAIEALKRAGIEGPFELQAKEGLALVNGTAVGSAVAATVCYDANILALLAVVLSALFCEAMLGKPEFADPLTHKLKHHPGQIESAAAMEFLLDQSDFMKEAKSRNENDPLTKPKQDRYALRTSPQWLGPQIEVIRMATHSIEREINSVNDNPLIDIDRDLARHGGNFQGTPIGVSMDNLRIAIAAIGKLMFAQFSELVCDHYNNGLPSNLSGGPNPSLDYGFKGAEIAMAAYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISARKSAEAIEILKLMSATYMVALCQAIDLRQYEENMREVVKNALLQTIKKTLYVAEYGSLLESRFCEKDLLQVIEREAIFSYIDDPTNTSYTLIPKLLEVLVEKALKGVTTGKSENENETGIAIFKQIPGFLEELKAKLEKDVENARERFENGDFEVENRIKKCSTYPIYRFVRCEVGTQLLSGAKKVSPGEDIEKVVEAIDEGKLGNAVIQCLKN 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29679235 29681370 + CmPI595203_03g021260.1 Cmu03g2126 412912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g2126 711 Pfam Aromatic amino acid lyase 68 534 IPR001106 -
Cmu03g2126 711 Gene3D - 528 654 IPR023144 -
Cmu03g2126 711 SUPERFAMILY L-aspartase-like 32 710 IPR008948 GO:0003824(InterPro)
Cmu03g2126 711 CDD PAL-HAL 66 525 IPR001106 -
Cmu03g2126 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841(InterPro)
Cmu03g2126 711 Gene3D Fumarase/aspartase (Central domain) 262 710 - -
Cmu03g2126 711 NCBIfam phenylalanine ammonia-lyase 31 710 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cmu03g2126 711 Gene3D - 21 261 IPR024083 -
Cmu03g2126 711 PANTHER HISTIDINE AMMONIA-LYASE 26 711 IPR001106 GO:0016841(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2126 Cmu-Chr3:29679235 Cmu04g0947 Cmu-Chr4:23935173 6.00E-237 dispersed
Cmu03g2126 Cmu-Chr3:29679235 Cmu04g0943 Cmu-Chr4:23909135 1.50E-235 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g2126 K10775 - csv:101205510 1259.97