Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g2183 ATGATTATCAGTGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCATTAACGATACCAGAGGAACCTCCTGCAAGCGAGACGCGGTTTGCTTTTCCTCTGAGTGGAATCTCGGTGAGTTCTGATGGCAATGCCAATGGCGGTGATTATTCTCCTTATTATCTCCAGGAAGCCCTAGCGGCACTTCAGCGATATACGAACGAGTCGGAGATTGAATCTGATTCGGAGTTGTCCGGACGGGAATCGGACGTTCCGGTGGATGCTTATTCTTGCGATCATTTTCGGATTTTTGAGTTCAAGGTGAGGAAGTGTACGCGTGGACGGTCTCATGATTGGACGGAGTGTCCGTACGCTCATCCAGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTATCATTACTCTGGTACGGCGTGCCCTGACTTTCGAAAAGGTAGCTGTAAGAAAGGCGATTCGTGCGAGTTTGCGCATGGTGTTTTTGAGTGTTGGCTTCATCCTACTCGTTACAGGACTCAGCCATGTAAGGACGGAACCAACTGTCGAAGAAGAGTCTGTTTCTTCGCCCATACTCCTGAACAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAAGCGCGAACTCGCCTGAGTCGTATGATGAATCTCCACTTCGGCAGTCTTTGGATGGATCCTGTGCTAAATCGCTGCCGTTTCTGTCTTCTCCGGTGTCTGTTTCACCAACAGCGACTCCGGTGGATTCCCCACCGTTATCGCCCATGACTCGGTCTCTCGGCCGGTCCCTGGGCTCGAGTTCCATCAATGAAATGGTCGCATCTCTCCGGAACTTGCATCTAAGCAAGGTCAAATCCCTGCCATCTTCCTGGAATGTTCAAATTGGATCTCCTGGTTACCCGTCTCGAGTCTGCCATGGATTTTGTAGCCTTCCAACAACACCAACTCGGGCTCCAACTGGTCATGGAGTTGGACTGCTCGACTTCTCGGAGCATGGATTTGAGGAGGAACCGGCGATGGAGCGAGTTGAGTCGGGAAGGGAGCTGAGGGCGAAGATGCTGGAGAAACTGAGCAAGGAAAATTCTCTGGACCTGGCTGATTCAAATCCTTCAGCCTGCACACCAGATGTTGGATGGGTATCAGAGCTGGTGAAGTGA 1149 52.22 MIISERHRPGPVVHITPLTIPEEPPASETRFAFPLSGISVSSDGNANGGDYSPYYLQEALAALQRYTNESEIESDSELSGRESDVPVDAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPTRYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSANSPESYDESPLRQSLDGSCAKSLPFLSSPVSVSPTATPVDSPPLSPMTRSLGRSLGSSSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFSEHGFEEEPAMERVESGRELRAKMLEKLSKENSLDLADSNPSACTPDVGWVSELVK 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30337099 30338247 + CmPI595203_03g021830.1 Cmu03g2183 412969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g2183 382 SMART c3hfinal6 134 160 IPR000571 GO:0046872(InterPro)
Cmu03g2183 382 SMART c3hfinal6 169 192 IPR000571 GO:0046872(InterPro)
Cmu03g2183 382 FunFam Zinc finger CCCH domain-containing protein 66 92 160 - -
Cmu03g2183 382 ProSiteProfiles Zinc finger C3H1-type profile. 135 161 IPR000571 GO:0046872(InterPro)
Cmu03g2183 382 MobiDBLite consensus disorder prediction 197 221 - -
Cmu03g2183 382 MobiDBLite consensus disorder prediction 236 257 - -
Cmu03g2183 382 PANTHER UNKEMPT FAMILY MEMBER 51 382 IPR045234 -
Cmu03g2183 382 SUPERFAMILY CCCH zinc finger 133 163 IPR036855 GO:0046872(InterPro)
Cmu03g2183 382 Gene3D - 134 198 - -
Cmu03g2183 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 159 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1948 Cmu-Chr2:33329621 Cmu03g2183 Cmu-Chr3:30337099 8.40E-50 dispersed
Cmu03g2183 Cmu-Chr3:30337099 Cmu07g0298 Cmu-Chr7:2964354 5.10E-57 dispersed
Cmu11g0187 Cmu-Chr11:2306146 Cmu03g2183 Cmu-Chr3:30337099 3.10E-126 wgd
Cmu03g2183 Cmu-Chr3:30337099 Cmu05g1809 Cmu-Chr5:28221820 9.80E-93 wgd
Cmu03g2183 Cmu-Chr3:30337099 Cmu07g1670 Cmu-Chr7:32037698 3.40E-45 wgd
Cmu03g2183 Cmu-Chr3:30337099 Cmu08g1620 Cmu-Chr8:27903551 4.10E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5952 PF00642 zf-CCCH 1.70E-06 CL0537 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g2183 - - - 0.0