Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu03g2183 | ATGATTATCAGTGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCATTAACGATACCAGAGGAACCTCCTGCAAGCGAGACGCGGTTTGCTTTTCCTCTGAGTGGAATCTCGGTGAGTTCTGATGGCAATGCCAATGGCGGTGATTATTCTCCTTATTATCTCCAGGAAGCCCTAGCGGCACTTCAGCGATATACGAACGAGTCGGAGATTGAATCTGATTCGGAGTTGTCCGGACGGGAATCGGACGTTCCGGTGGATGCTTATTCTTGCGATCATTTTCGGATTTTTGAGTTCAAGGTGAGGAAGTGTACGCGTGGACGGTCTCATGATTGGACGGAGTGTCCGTACGCTCATCCAGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTATCATTACTCTGGTACGGCGTGCCCTGACTTTCGAAAAGGTAGCTGTAAGAAAGGCGATTCGTGCGAGTTTGCGCATGGTGTTTTTGAGTGTTGGCTTCATCCTACTCGTTACAGGACTCAGCCATGTAAGGACGGAACCAACTGTCGAAGAAGAGTCTGTTTCTTCGCCCATACTCCTGAACAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAAGCGCGAACTCGCCTGAGTCGTATGATGAATCTCCACTTCGGCAGTCTTTGGATGGATCCTGTGCTAAATCGCTGCCGTTTCTGTCTTCTCCGGTGTCTGTTTCACCAACAGCGACTCCGGTGGATTCCCCACCGTTATCGCCCATGACTCGGTCTCTCGGCCGGTCCCTGGGCTCGAGTTCCATCAATGAAATGGTCGCATCTCTCCGGAACTTGCATCTAAGCAAGGTCAAATCCCTGCCATCTTCCTGGAATGTTCAAATTGGATCTCCTGGTTACCCGTCTCGAGTCTGCCATGGATTTTGTAGCCTTCCAACAACACCAACTCGGGCTCCAACTGGTCATGGAGTTGGACTGCTCGACTTCTCGGAGCATGGATTTGAGGAGGAACCGGCGATGGAGCGAGTTGAGTCGGGAAGGGAGCTGAGGGCGAAGATGCTGGAGAAACTGAGCAAGGAAAATTCTCTGGACCTGGCTGATTCAAATCCTTCAGCCTGCACACCAGATGTTGGATGGGTATCAGAGCTGGTGAAGTGA | 1149 | 52.22 | MIISERHRPGPVVHITPLTIPEEPPASETRFAFPLSGISVSSDGNANGGDYSPYYLQEALAALQRYTNESEIESDSELSGRESDVPVDAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPTRYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSANSPESYDESPLRQSLDGSCAKSLPFLSSPVSVSPTATPVDSPPLSPMTRSLGRSLGSSSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFSEHGFEEEPAMERVESGRELRAKMLEKLSKENSLDLADSNPSACTPDVGWVSELVK | 382 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 30337099 | 30338247 | + | CmPI595203_03g021830.1 | Cmu03g2183 | 412969 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu03g2183 | 382 | SMART | c3hfinal6 | 134 | 160 | IPR000571 | GO:0046872(InterPro) | |
Cmu03g2183 | 382 | SMART | c3hfinal6 | 169 | 192 | IPR000571 | GO:0046872(InterPro) | |
Cmu03g2183 | 382 | FunFam | Zinc finger CCCH domain-containing protein 66 | 92 | 160 | - | - | |
Cmu03g2183 | 382 | ProSiteProfiles | Zinc finger C3H1-type profile. | 135 | 161 | IPR000571 | GO:0046872(InterPro) | |
Cmu03g2183 | 382 | MobiDBLite | consensus disorder prediction | 197 | 221 | - | - | |
Cmu03g2183 | 382 | MobiDBLite | consensus disorder prediction | 236 | 257 | - | - | |
Cmu03g2183 | 382 | PANTHER | UNKEMPT FAMILY MEMBER | 51 | 382 | IPR045234 | - | |
Cmu03g2183 | 382 | SUPERFAMILY | CCCH zinc finger | 133 | 163 | IPR036855 | GO:0046872(InterPro) | |
Cmu03g2183 | 382 | Gene3D | - | 134 | 198 | - | - | |
Cmu03g2183 | 382 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 138 | 159 | IPR000571 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g1948 | Cmu-Chr2:33329621 | Cmu03g2183 | Cmu-Chr3:30337099 | 8.40E-50 | dispersed | |
Cmu03g2183 | Cmu-Chr3:30337099 | Cmu07g0298 | Cmu-Chr7:2964354 | 5.10E-57 | dispersed | |
Cmu11g0187 | Cmu-Chr11:2306146 | Cmu03g2183 | Cmu-Chr3:30337099 | 3.10E-126 | wgd | |
Cmu03g2183 | Cmu-Chr3:30337099 | Cmu05g1809 | Cmu-Chr5:28221820 | 9.80E-93 | wgd | |
Cmu03g2183 | Cmu-Chr3:30337099 | Cmu07g1670 | Cmu-Chr7:32037698 | 3.40E-45 | wgd | |
Cmu03g2183 | Cmu-Chr3:30337099 | Cmu08g1620 | Cmu-Chr8:27903551 | 4.10E-67 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5952 | PF00642 | zf-CCCH | 1.70E-06 | CL0537 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu03g2183 | - | - | - | 0.0 |