Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g2201 ATGGGGAGAGCAACCAGATGGTTCAAGAATTTGTTTGGGATTAAGAGAGACAAAGAACCCACGAGAGAAATTTCCAACGCCGGCATCAACAAGGAAAAAAAACCCGCTTCGAATTTCACCGGCGACGCCGAACTCTGCAACAATCCGGCGACAATACCGCCGAATTTGTCAGCGGCGGAAGCGGCTTGGCTCAAATCCTTCTACTCGGAAACAGAGAAGGAACAGAGCAAACACGCAATAGCAGTAGCTGCAGCCACTGCCGCTGCAGCCGACGCCGCAGTTGCTGCAGCACAAGCCGCCGTGGCAGTGGTCCGGCTAACCAGCCACGGGAGAGGCACCATGTTCGGCGGCGGCCGGGAAAGATGGGCCTCTGTTAAGATTCAAACTTGCTTCAGAGGATATCTGGCGAGGAAAGCACTGAGAGCTTTGAAAGGATTGGTGAAATTACAAGCGCTTGTGAGAGGATATTTAGTTCGTAAACAAGCAACAGCAACTCTTCATAGTATGCAAGCTTTAATCAGAGCTCAAGCCACCGTTCGATCTCAGAGAACTCGTAGATTCATAAACGACGAAACAAGACTTGAAATCCGAGCCAGAAAATCAATGGAGAGATTTGATGACACAAAAAGCGAACACACAGCTTCGGTACACAGCAGAAGACTCTCTGCTTCATTAGATAACACAGCATTCACAGCAATGGAAGAAAGCCCCAAAATCGTGGAAATCGACACCGGCCGACCAAAATCCTGGTCACGCCGGACGAACACGTCGGCGTCGGAATTAAGCGACGACCTATTTCACCAAACTCTCTCGTCTCCACTCCCTTGCCGGACTCCGTCGCGTTTGCAAATCCCAGATTGCCGGAATTTCCATGACTCTGACTGGTGCGGCGGCGACGACTGGCGTTTAATCTCGACGGCGCAGAGTACTCCACGATTTGTGAACTCTGGCGGTGGATCGAACGGTCCTCCGACGCCGGCGAAGAGTATGTGTGGGGAGAATTTCTTTAAAGGGTATTTGAATTTTCCAAATTACATGGCGAATACTCAATCGTTTAAGGCGAAATTGAGATCTCAGAGTGCACCGAAACAGAGGCCGGAGCTGGGATCGAAGAAAAGGGTTTCGTTGAATGAATTGATGGAATCGAGAAGTAGTCTTAGTGGAGTTAGAATGCAGAGATCTTGTTCTCAAGTTCAAGAAGCCATTAATTTCAAGAACGCAGTGATGAGCAAACTCGATAGGCCATCAGAATTCAACAATTTGCAGAGAAGAATATGA 1278 48.98 MGRATRWFKNLFGIKRDKEPTREISNAGINKEKKPASNFTGDAELCNNPATIPPNLSAAEAAWLKSFYSETEKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTCFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQATVRSQRTRRFINDETRLEIRARKSMERFDDTKSEHTASVHSRRLSASLDNTAFTAMEESPKIVEIDTGRPKSWSRRTNTSASELSDDLFHQTLSSPLPCRTPSRLQIPDCRNFHDSDWCGGDDWRLISTAQSTPRFVNSGGGSNGPPTPAKSMCGENFFKGYLNFPNYMANTQSFKAKLRSQSAPKQRPELGSKKRVSLNELMESRSSLSGVRMQRSCSQVQEAINFKNAVMSKLDRPSEFNNLQRRI 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30509177 30510663 - CmPI595203_03g022010.1 Cmu03g2201 412987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g2201 425 ProSiteProfiles IQ motif profile. 144 171 - -
Cmu03g2201 425 SMART iq_5 119 141 IPR000048 GO:0005515(InterPro)
Cmu03g2201 425 SMART iq_5 142 163 IPR000048 GO:0005515(InterPro)
Cmu03g2201 425 Pfam Protein of unknown function (DUF4005) 321 388 IPR025064 -
Cmu03g2201 425 PANTHER IQ-DOMAIN 5-RELATED 6 393 - -
Cmu03g2201 425 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515(InterPro)
Cmu03g2201 425 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515(InterPro)
Cmu03g2201 425 ProSiteProfiles IQ motif profile. 120 148 - -
Cmu03g2201 425 MobiDBLite consensus disorder prediction 356 375 - -
Cmu03g2201 425 Gene3D - 118 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2201 Cmu-Chr3:30509177 Cmu09g0023 Cmu-Chr9:529912 7.10E-84 dispersed
Cmu02g1641 Cmu-Chr2:30262854 Cmu03g2201 Cmu-Chr3:30509177 3.40E-09 wgd
Cmu03g2201 Cmu-Chr3:30509177 Cmu07g1313 Cmu-Chr7:28460699 1.10E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g2201 - - - 0.0