Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g2215 ATGGATCCTCGCAACGACGCCGTTTTCCCCGACGAAGACCTCGAGGACGACGAGGAATCCCTCGACGACGAAGACGACGACGAAGAGGAGGAGGAATTGAACGACGATCCTTCTCCTTCCACTTCCTCCGCCGGCGCTGTTCCTGTCCCTTCCGTCTCCGCTACCGTCACCGTCGCCACTCCTGCCGTCTCCGTTGTTCCTCCTCCTTCGATTGTTTCAATCTCCTCTGCCGATCTGATACGCCAGCGCCTCGAGACCGCCACCGCCGAGCCTTTGACCTTGCAGGGGGAGAAGAAGCCCTTGGATGAGTCCAGGAAGTTGTTTCAACGCCTTTGGACCGATGAGGATGAGATCGAGCTTTTGCAGGGGTTTTTGGACTACACGATGCAGCGTGGTACGACTCATCATCATCAGAACGATACGGCGTTGTTTTACGACCAGATCAAGTCGAAATTACAGCTGGATTTTAACAAGAATCAGCTCGTTGAGAAGCTTCGGAGGTTGAAGAAGAAATATCGCAACGTTATTGGTAAGATTAGCTCTGGTAAGGACTTCAATTTCAAAAGCCCTCACGATCAGGCTACGTTTGAGATTTCTCGCAAGATCTGGAGCAATACCGGCCGAATTGGAGTCGACGACAACGCTTTAGACGATGACGAACCTGCTGCTCCGACTCCGTATGCTAGCTACATGGACCACAGAAACGAAGAGATGATGGCGAATTGCGCAGAGAAGAAACCGACGCCGACTCCGAAATCGCGGAAGCGCACACGGCCTGGATCGGGAATTAGAATGGACGTTCCGCGTTCGTCTAATGAGAATTTGAGTAAAGAGAAAAACAGTACCTACCACAACAACACCAACAACAACGAAAATGTCAATAACGTAGCGGTAGCAGGATTGATCGAGGAGACGGTGAGGAGCTGCCTGTCGCCATTGTTTAAGGAATTGCTGAATACTTCCATGGGAGGAGGGCTCTGTGGTGGAAGCAGAGGGTTTAGTGGATTGGCTTCGCATCCGATTCCATTGAGCTTCGGTGGTGCTTCCATCAATTTCGGAGGTGGAGGTGAAATGGCGGATGAGAGGTGGAGGAAGCAGCAGATTTTGGAACTGGAAGTTTATTCGAAGAGGTTGGAGTTGGTTCAAGAACAAATTAAGACGGCATTAGAAGACTTGAGGTCCATGGGAGGCTGA 1194 51.17 MDPRNDAVFPDEDLEDDEESLDDEDDDEEEEELNDDPSPSTSSAGAVPVPSVSATVTVATPAVSVVPPPSIVSISSADLIRQRLETATAEPLTLQGEKKPLDESRKLFQRLWTDEDEIELLQGFLDYTMQRGTTHHHQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVIGKISSGKDFNFKSPHDQATFEISRKIWSNTGRIGVDDNALDDDEPAAPTPYASYMDHRNEEMMANCAEKKPTPTPKSRKRTRPGSGIRMDVPRSSNENLSKEKNSTYHNNTNNNENVNNVAVAGLIEETVRSCLSPLFKELLNTSMGGGLCGGSRGFSGLASHPIPLSFGGASINFGGGGEMADERWRKQQILELEVYSKRLELVQEQIKTALEDLRSMGG 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30682698 30683891 + CmPI595203_03g022150.1 Cmu03g2215 413001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g2215 397 MobiDBLite consensus disorder prediction 267 291 - -
Cmu03g2215 397 MobiDBLite consensus disorder prediction 1 49 - -
Cmu03g2215 397 Pfam Glabrous-enhancer-binding protein-like family, DBD domain 108 204 IPR053932 -
Cmu03g2215 397 Coils Coil 14 34 - -
Cmu03g2215 397 PANTHER BNAANNG10740D PROTEIN-RELATED 15 394 IPR007592 GO:0005634(PANTHER)|GO:0006355(InterPro)
Cmu03g2215 397 MobiDBLite consensus disorder prediction 9 36 - -
Cmu03g2215 397 Coils Coil 158 178 - -
Cmu03g2215 397 MobiDBLite consensus disorder prediction 242 291 - -
Cmu03g2215 397 Coils Coil 371 391 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2181 Cmu-Chr1:34335699 Cmu03g2215 Cmu-Chr3:30682698 3.10E-23 dispersed
Cmu02g0167 Cmu-Chr2:1636938 Cmu03g2215 Cmu-Chr3:30682698 2.20E-18 dispersed
Cmu02g1631 Cmu-Chr2:30132454 Cmu03g2215 Cmu-Chr3:30682698 1.30E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5955 PF04504 DUF573 1.40E-34 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g2215 - - - 0.0