Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g2230 ATGGCCGGAATCCCCTCTGAGGGGTTGGGGGATGATTTTTTCGAGCAGATTCTGGCGGTGCCGCCGTCTTACGGCGGCGCAGGTGGCGGTGATATGGTGTCTATGCCTATGGGACTACAACTTGGGTCCGGCGGCGGCGGCGGTGGTGGCGGCGGAGGAATGGGTATGCCTTTGGGATTGAATTTAGAACAGGGGTTTTTGAGACAAGAGAGATACAGAGAAGAGCTTGATGGCCACAATAATAATACCACTAATAATGCTTCTTCTTCTTCAACTGCTTCTTCAGGAATCACTGAGAGAGATTCTTCGATGCAGCACATGACAAACTTGTTTCCAACCTTTGGACATTTGCAGACTCAACAACTCCGCCCACCGCCGCCGTTACATCTCCACCAGCCCTTTCACAATCAAACAACTCCCATGACGGTTTCTGCTGTACCACAACCACCTCAAGTTCGACCAAGAGTTCGAGCAAGACGAGGGCAAGCGACCGATCCTCACAGTATTGCAGAAAGGTTGCGTCGAGAAAGAATTGCAGAAAGAATGAAGGCCTTGCAGGAGTTAGTTCCTAGTTGCAATAAGACTGATCGAGCGGCAATGCTCGATGAAATTGTTGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGTAGACTAGGTGGGGCAGGTGCGGTGGCTCAACTTGTGGCCGATGTGCCCCTATCGTCAGTCGAGGGAGAAGGCATTGAGAGTGGCAACAATCAGCATGCATGGGAAAAGTGGTCAAGTGATGGAACAGAGCAACAAGACACACCAAGCAGATCCACAAATCTTAGTCAAGCCAGAAATGAACACTCCCTAGACCATGGGCCCCGACGACATTGCAATTTGAGCAAGAGGGGATCGGTCTACATGAGACAGAAGAAATAG 921 49.62 MAGIPSEGLGDDFFEQILAVPPSYGGAGGGDMVSMPMGLQLGSGGGGGGGGGGMGMPLGLNLEQGFLRQERYREELDGHNNNTTNNASSSSTASSGITERDSSMQHMTNLFPTFGHLQTQQLRPPPPLHLHQPFHNQTTPMTVSAVPQPPQVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGNNQHAWEKWSSDGTEQQDTPSRSTNLSQARNEHSLDHGPRRHCNLSKRGSVYMRQKK 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30934821 30942567 - CmPI595203_03g022300.1 Cmu03g2230 413016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g2230 306 Gene3D - 155 212 IPR036638 GO:0046983(InterPro)
Cmu03g2230 306 FunFam Basic helix-loop-helix transcription factor 157 219 - -
Cmu03g2230 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 221 IPR036638 GO:0046983(InterPro)
Cmu03g2230 306 MobiDBLite consensus disorder prediction 256 281 - -
Cmu03g2230 306 MobiDBLite consensus disorder prediction 79 99 - -
Cmu03g2230 306 Pfam Helix-loop-helix DNA-binding domain 167 212 IPR011598 GO:0046983(InterPro)
Cmu03g2230 306 SMART finulus 168 217 IPR011598 GO:0046983(InterPro)
Cmu03g2230 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983(InterPro)
Cmu03g2230 306 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 82 222 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cmu03g2230 306 MobiDBLite consensus disorder prediction 141 166 - -
Cmu03g2230 306 MobiDBLite consensus disorder prediction 256 306 - -
Cmu03g2230 306 MobiDBLite consensus disorder prediction 77 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2230 Cmu-Chr3:30934821 Cmu06g1282 Cmu-Chr6:23956548 2.80E-34 dispersed
Cmu09g0715 Cmu-Chr9:6719025 Cmu03g2230 Cmu-Chr3:30934821 2.10E-53 transposed
Cmu03g2230 Cmu-Chr3:30934821 Cmu07g1641 Cmu-Chr7:31708953 1.00E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5957 PF00010 HLH 6.60E-08 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g2230 - - - 0.0