Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g2235 ATGCCGCCTTTCCTTCATTTGCCTTGTTCCCCTCTCAAAAGGTTCATTTCACACACCTCAAAATCCTCCATAAACAATGCCCTGTTCAACCCACAACCCAATCTTCAACCATTTTTCTCATTTCTCCAAGAATTTCCCCATAACATTTTGTCGGTCAAATCCATACACGCCCAGATTATTATCACAAACGCCATATCTGGGGACCAAATTTTGGTTGCAAAGCTTGTTCAGGCGTACTCAGGCTTGGGTTGTTTGGAAAATGCACGGAAAGTGTTTGATAACTTTCCTCAACCAAAAACCCTTCTTTGCAATGCCATGGTTAATGGGTATCTGCAAAATGAGCATTATAATGACAGTATCGAGCTGCTTAAGATGATGAGTCGATGTGATTTGGAATTTGATAGTTATACTTGTAATTTTGCTCTTAAGGCATGCATGTCCTTATTGGATTATGAAATGGGGATGGAAGTGATTAGATTAGCTGTGTGTAGGGGGTTGGCTAGAGGTCGGTTTTTGGGAAGTTCTATTTTGAATTTTTTGGTGAAAACTGGTGATATTATGAGTGCACAATTTTTTTTTCATCAAATGGTTGAGAAAGATGTTGTTTGTTGGAATGTGATGATTGGTGGGTTCATGCAAGAGGGCTTGTTTAGTGAAGGTTATAATGTGTTCCTTGATATGCTTTATAATAAAATTGAGCCCAGTGCTGTGACCATGACAATCTTGATTCAATCCTGTGGGGAGATGAGGAATTTAAAGTTTGGAAAATGTATACATAGCTATGTTCTTGGATTTGGAATGAGTAGTGATACGAGGGTGCTTACCTCATTGATTGATATGTATTGTAAATCGGGTGACGTCGAAAGTGCTCGATGGATTTTCGATATGATGCCCTTGAGGAACTTGGTCTCTTGGAATGTTATGATTTCGGGATATGTCCAAAATGGTTTTCTTGTTGAAACTTTATATCTCTTTCGGATGTTGGTTATGAATGATGGAGGTTTCGATTCAGGTACTGCTGTTAGCCTCATCCAGCTGTGTTCTCGCACGGCTGATTTGGATGGCGGCAAGGTTCTTCATGGTTGCATCTATCGAAGGGGACTTGATTTGAATTTGGTTTTGTCTACTGCAATTGTTGATCTATATGCTAAATGTGGATCCCTGGCCTATGCATCTTCTGTTTTTGAAAGAATGAAAAATAAGAATGTGATTTCATGGACTGCCATGCTTGTGGGACTGGCACAGAATGGGCATGCTAGAGATGCCTTAAAGTTATTTTATCGGATGCAAAATGAGAGAGTTACTTTCAATGCCCTCACCTTAGTTAGTTTAGTCCAATGTTGCGCGCTCCTAGGCTTGTTACGTGAAGGGAGATGTGTGCATGCTATCTTAACTCGATTTCATTTTGCTTCCGAAGTTGTCGTTATAACAGCCCTCATTGATATGTATGCAAAATGCAGCAAAATAAACTCAGCTGAGAAGGTATTCAAGTATGGTTTTACGCCTAAGGATGTGATATTATATAACGCTATGATTTCGGGCTATGGAATGCACGGTCTTGGGCGTAAAGCACTGTGCGTCTACCATCAAATGAATCTAGAAGGACTTCAGCCAAACGAGAGTACCTTTGTTTCTCTGCTATCTGCTTGTAGCCATTCAGGCCTGGTGGAAGAGGGGATCTCTTTGTTTCAAAATATGGAGAAAGATCATGACGTAACACCTACCGATAAACTTTACGCTTGTTTTGTAGATCTTCTATGTCGAGCAGGTCGCCTTCGGCAAGCTGAGGAATTAATCAATCAAATGCCTTTCATACCAACCAGTGGCATACTTGAAACTCTGCTGAATGGATGTCTTTTGCACAAGGACATTGAATTAGGTGTAAAATTTGCTGACAGATTACTCTCCTTGGAGTCTAGAAATCCAAGCATCTACATTACCTTGTCAAATATATATGCCGAAGCAAGTCGATGGGATTCGGTAAAGTATGTTCGAGGTCTCATGACCGAGCAAGAGCTTAAAAAGATTCCAGGATATAGCTCAATTGAAGTAAAAATTCAGTCTCCCAACAGAGCCCACAACAACCACGACAATCAACTGCAAACAATCCACAATTATGATGATCCCAATTTCCCTGTTCTGCTTTCCGGTCGATCGTTTTCTTTGATGGGGTTTTCATGTTTCTTTGTTCTTGTGAGAAAATCTATGAGTGAAGTGCTTCTCCGAGAGGCGTCTTCTAGAGGTGTAGAAGCCCCTGTAGATAAGGGGAAGAGGAATCAAATTACTGAGTCTCGTGTCCAAGGCGAGAGTGTTCAGGAGAAAGAAGTAGAACGTGTGAGTGCTAATGTAGAGGAGCATGTAAACGTGAACAAGGAAGAGGAGCAGAAGGCTGATGGGGTTCAGGAGCGCCCACGAGCAGAACGGAGAAAGTCGAGGAAGGTTCCGAGGCCAACTAACTTGCCAAACCATTCCCAGGGAGAGCAAGTTGCTGCTGGATGGCCTTCTTGGCTCACGGCAGTTTGTGGAGAGGCTCTCAATGGTTGGATTCCTCGGAAGGCTGATACATTTGAAAAGATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTATAAAGCTAAAGATATACTTACAGGTAAAATTGTTGCACTGAAGAAGGTTCGGTTTGACAATTTGGAACCTGAAAGTGTGAAATTTATGGCTAGAGAGATTCTTATCCTTAGGAGATTAAATCATAACAATGTTGTGAAATTGGAGGGCTTGGTTACATCACGGATGTCTTGTAGTTTATACTTGGTGTTTGAGTACATGGAACATGATTTAGCAGGTCTTGCTGCAAATCCATCGATCAAATTTACGGAATCTCAGGTTAAATGTTTCATGCAACAACTGCTATCTGGACTGGAACACTGTCATAATCGACGGGTGCTTCACCGTGACATTAAAGGATCTAATCTTCTCATTGATAGTGGGGGAGTGCTTAAAATTGCCGACTTTGGATTGGCTTCTTTCTTTGATCCGAATCACAAGCACCCTATGACTAGTCGGGTGGTTACCTTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCAACTGATTATGGAGTAGGTGTAGACCTCTGGAGTGCTGGGTGTATACTGGCTGAGTTATTAGCTGGGAGGCCTATTATGCCTGGCCGTACAGAGGTGGAGCAACTACACAAGATATACAAGCTTTGTGGCTCCCCTTCAGATGAATATTGGAAAAGAGCAAAACTTCCAAATGCAACTTTATTTAAGCCCAGAGAACCTTATAAAAGATGTATAAAGGAGACATTTAAAGATTTCCCCCCATCTTCTCTGCCCCTTATAGAAACGCTTCTTGCAATTGATCCAGCAGAACGAAAGACAGCAACAGATGCATTAAATAGCGAGTTCTTCATGACAGAACCTTTAGCCTGCAAACCCTCCAACCTCCCGAAATATCCTCCCAGTAAGGAGATGGATGCTAGAAGACGGGATGATGAAGCTCGGAGACTAAGAGCAGCTAGTAAAGCCCAGGGAGATGGAGCGAAGAAAACACGCACACGTGTTAGGGCTATTCCAGCTCCCGAAGCCAATGCCGAAATACAAACAAATATTGACAGGAGGCGCTTAATTACACATGCAAATGCAAAGAGCAAAAGTGAAAAGTTTCCCCCACCACATCAGGATGGAGCGCTTGGCTTTACGCTAGGATATTCACGTCATATCGACCCATCTGGTGTTCCTCCCGACATACCGTTCAGCTCGACGCTGTTCACTTATTCTAAGGAACCAGTCCAAGCCTGGTCTGGTCCACTAGTCCCTGGTGCTGGCACTGAGGCTCCTAGGCAGAAGAAGCATGTAGGAGGTGTATCATCAAATTCTTCCCACGGTTCATCCAAATTGGTAATCAATCAGCCTGGCCTACTCTCAGCTGAGGAGATCATGAATTGA 3957 42.56 MPPFLHLPCSPLKRFISHTSKSSINNALFNPQPNLQPFFSFLQEFPHNILSVKSIHAQIIITNAISGDQILVAKLVQAYSGLGCLENARKVFDNFPQPKTLLCNAMVNGYLQNEHYNDSIELLKMMSRCDLEFDSYTCNFALKACMSLLDYEMGMEVIRLAVCRGLARGRFLGSSILNFLVKTGDIMSAQFFFHQMVEKDVVCWNVMIGGFMQEGLFSEGYNVFLDMLYNKIEPSAVTMTILIQSCGEMRNLKFGKCIHSYVLGFGMSSDTRVLTSLIDMYCKSGDVESARWIFDMMPLRNLVSWNVMISGYVQNGFLVETLYLFRMLVMNDGGFDSGTAVSLIQLCSRTADLDGGKVLHGCIYRRGLDLNLVLSTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFYRMQNERVTFNALTLVSLVQCCALLGLLREGRCVHAILTRFHFASEVVVITALIDMYAKCSKINSAEKVFKYGFTPKDVILYNAMISGYGMHGLGRKALCVYHQMNLEGLQPNESTFVSLLSACSHSGLVEEGISLFQNMEKDHDVTPTDKLYACFVDLLCRAGRLRQAEELINQMPFIPTSGILETLLNGCLLHKDIELGVKFADRLLSLESRNPSIYITLSNIYAEASRWDSVKYVRGLMTEQELKKIPGYSSIEVKIQSPNRAHNNHDNQLQTIHNYDDPNFPVLLSGRSFSLMGFSCFFVLVRKSMSEVLLREASSRGVEAPVDKGKRNQITESRVQGESVQEKEVERVSANVEEHVNVNKEEEQKADGVQERPRAERRKSRKVPRPTNLPNHSQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKIVALKKVRFDNLEPESVKFMAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFMQQLLSGLEHCHNRRVLHRDIKGSNLLIDSGGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRAKLPNATLFKPREPYKRCIKETFKDFPPSSLPLIETLLAIDPAERKTATDALNSEFFMTEPLACKPSNLPKYPPSKEMDARRRDDEARRLRAASKAQGDGAKKTRTRVRAIPAPEANAEIQTNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPSGVPPDIPFSSTLFTYSKEPVQAWSGPLVPGAGTEAPRQKKHVGGVSSNSSHGSSKLVINQPGLLSAEEIMN 1318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30980116 31001048 + CmPI595203_03g022350.1 Cmu03g2235 413021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g2235 1318 MobiDBLite consensus disorder prediction 1150 1189 - -
Cmu03g2235 1318 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 474 700 - -
Cmu03g2235 1318 CDD STKc_CDK9_like 856 1140 - -
Cmu03g2235 1318 Gene3D Phosphorylase Kinase; domain 1 843 938 - -
Cmu03g2235 1318 Pfam PPR repeat 376 403 IPR002885 -
Cmu03g2235 1318 Pfam PPR repeat 477 497 IPR002885 -
Cmu03g2235 1318 Pfam PPR repeat 303 329 IPR002885 -
Cmu03g2235 1318 Pfam PPR repeat 275 300 IPR002885 -
Cmu03g2235 1318 Pfam PPR repeat 581 602 IPR002885 -
Cmu03g2235 1318 Pfam PPR repeat 103 130 IPR002885 -
Cmu03g2235 1318 Pfam PPR repeat 404 433 IPR002885 -
Cmu03g2235 1318 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Cmu03g2235 1318 ProSitePatterns Serine/Threonine protein kinases active-site signature. 976 988 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu03g2235 1318 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Cmu03g2235 1318 MobiDBLite consensus disorder prediction 1276 1303 - -
Cmu03g2235 1318 FunFam probable serine/threonine-protein kinase At1g54610 939 1180 - -
Cmu03g2235 1318 FunFam Pentatricopeptide repeat (PPR-like) superfamily protein 254 352 - -
Cmu03g2235 1318 Gene3D Tetratricopeptide repeat domain 258 332 IPR011990 GO:0005515(InterPro)
Cmu03g2235 1318 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 435 685 IPR050421 -
Cmu03g2235 1318 Gene3D Tetratricopeptide repeat domain 454 555 IPR011990 GO:0005515(InterPro)
Cmu03g2235 1318 Gene3D Tetratricopeptide repeat domain 341 453 IPR011990 GO:0005515(InterPro)
Cmu03g2235 1318 Gene3D Tetratricopeptide repeat domain 168 257 IPR011990 GO:0005515(InterPro)
Cmu03g2235 1318 Gene3D Tetratricopeptide repeat domain 51 167 IPR011990 GO:0005515(InterPro)
Cmu03g2235 1318 Coils Coil 776 803 - -
Cmu03g2235 1318 Pfam E motif 621 683 IPR046848 -
Cmu03g2235 1318 MobiDBLite consensus disorder prediction 748 808 - -
Cmu03g2235 1318 Pfam Protein kinase domain 856 1140 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g2235 1318 Gene3D Tetratricopeptide repeat domain 556 702 IPR011990 GO:0005515(InterPro)
Cmu03g2235 1318 MobiDBLite consensus disorder prediction 743 828 - -
Cmu03g2235 1318 Pfam PPR repeat family 199 246 IPR002885 -
Cmu03g2235 1318 Pfam PPR repeat family 503 551 IPR002885 -
Cmu03g2235 1318 ProSiteProfiles Protein kinase domain profile. 856 1140 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g2235 1318 ProSitePatterns Protein kinases ATP-binding region signature. 862 885 IPR017441 GO:0005524(InterPro)
Cmu03g2235 1318 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Cmu03g2235 1318 FunFam probable serine/threonine-protein kinase At1g54610 843 938 - -
Cmu03g2235 1318 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Cmu03g2235 1318 Gene3D Transferase(Phosphotransferase) domain 1 939 1179 - -
Cmu03g2235 1318 SUPERFAMILY Protein kinase-like (PK-like) 851 1144 IPR011009 -
Cmu03g2235 1318 NCBIfam pentatricopeptide repeat 507 540 IPR002885 -
Cmu03g2235 1318 NCBIfam pentatricopeptide repeat 404 435 IPR002885 -
Cmu03g2235 1318 NCBIfam pentatricopeptide repeat 542 575 IPR002885 -
Cmu03g2235 1318 NCBIfam pentatricopeptide repeat 202 235 IPR002885 -
Cmu03g2235 1318 NCBIfam pentatricopeptide repeat 303 329 IPR002885 -
Cmu03g2235 1318 MobiDBLite consensus disorder prediction 1289 1303 - -
Cmu03g2235 1318 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 539 569 IPR002885 -
Cmu03g2235 1318 FunFam Pentatricopeptide repeat-containing protein mitochondrial 354 461 - -
Cmu03g2235 1318 SMART serkin_6 856 1140 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu03g2235 1318 MobiDBLite consensus disorder prediction 1158 1189 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2235 Cmu-Chr3:30980116 Cmu05g1044 Cmu-Chr5:9626629 2.10E-171 dispersed
Cmu11g1887 Cmu-Chr11:30902079 Cmu03g2235 Cmu-Chr3:30980116 2.30E-47 dispersed
Cmu01g1539 Cmu-Chr1:28967087 Cmu03g2235 Cmu-Chr3:30980116 2.10E-118 transposed
Cmu02g2396 Cmu-Chr2:37416799 Cmu03g2235 Cmu-Chr3:30980116 2.90E-96 transposed
Cmu03g0999 Cmu-Chr3:4593933 Cmu03g2235 Cmu-Chr3:30980116 3.30E-191 transposed
Cmu05g0636 Cmu-Chr5:5465101 Cmu03g2235 Cmu-Chr3:30980116 2.10E-232 transposed
Cmu05g2220 Cmu-Chr5:31720131 Cmu03g2235 Cmu-Chr3:30980116 3.20E-59 transposed
Cmu08g0078 Cmu-Chr8:1573914 Cmu03g2235 Cmu-Chr3:30980116 3.40E-154 transposed
Cmu08g0305 Cmu-Chr8:7601633 Cmu03g2235 Cmu-Chr3:30980116 3.90E-120 transposed
Cmu11g0057 Cmu-Chr11:1061686 Cmu03g2235 Cmu-Chr3:30980116 6.80E-167 transposed
Cmu02g1621 Cmu-Chr2:30018491 Cmu03g2235 Cmu-Chr3:30980116 2.90E-242 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75427 PF00069 Pkinase 2.70E-67 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g2235 K08819 - csv:101213729 1124.0