Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu03g2236 | ATGACACCCATTTTGAGTTATGTTGTGTCCAAATGGCAAGCGTTGTCCACTTCTGATCATGCCTCTGTTGTTTCCATTAACTTGTTTGTGGCACTTCTCTGTGCTTGTATTGTGATTGGTCATCTTCTTGAGGAGACCCGGTGGATGAACGAGTCCATCACTGCACTGTTGATTGGTCTGTTTACTGGAGTCATCATTTTACTGGTCAGTGGTGGGAAAAGTTCGCATCTATTGCTCTTTAGCGAAGACACATTCTTCATTTATCTTCTGCCACCGATTATATTCAACGCTGGGTTTCAGGTGAAAAAGAAGCAGTTCTTTGTTAACTTTATGACCATTATGCTGTTTGGTGCAATTGGTACATTAGTCTCTTGTTTGATCATCTCGTTAGGAGCTTTTCAGTTCTTTAAGAAAATGGATGTTGGATCACTGGATATTGCTGATGTTTTAGCAATTGGAGCTATATTTGCCGCAACAGATTCTGTATGCACATTGCAGATATTAAATCAGGATGAAACCCCTCTACTTTACAGTCTAGTATTTGGGGAAGGTGTAGTAAATGATGCCACATCTGTAGTGCTTTTCAATGCAATTCAGAGCTTAGATCTCAGTAATGTTGATGCAAGAGTTGCTTTACATTTTATTGGGAGCTTCTTTTATCTATTTTCAACAAGCACTTTACTCGGAGTATTTGTTGGCCTGCTGAGTGCTTATGTAATCAAAAAGTTATATTTTGGCAGGCACTCGACAGATCGTGAGGTTGCTCTTATGATACTCATGGCATATCTTTCATATATGCTGGCTGAATTATTAGATTTGAGTGGCATTCTCACAGTGTTCTTTTGTGGAATTGTAATGTCACATTATACCTGGCATAACGTGACTGAGAGCTCAAGAGTTACCACCAAGCATGCTTTTGCTACCTTATCCTTCATTTCTGAGACGTTTATCTTCGTTTATGTCGGCATGGATGCATTGGACATTGAGAAGTGGAGCTTTGTTAGTGATAGTCCGGGGACATCAGTTGCTGTGAGCGCAATATTATTAGGCCTGGTCATGGTTGGAAGAGCTGCCTTTGTTTTTCCATTATCATTTATATCAAATTTAGCTAAAAAATCGGCAGGCGAGAAAATAACCTTCAGGGAACAAGTTATCATTTGGTGGGCTGGTCTCATGAGAGGTGCTGTTTCTATTGCTCTAGCTTATCATCAGTTCACCCGAGCTGGGCACACTCAACTACGAGGGAATGCAATGATGATCACTAGTACCATAACTGTTGTCCTCTTCAGCACAATGGTGTTTGGATTATTGACCAAGCCTCTTATTAACTGTTTGCTACCTCAACTAAAACACACCACCAGCATGCTATCGGACCCTGCGACTCCAAAATCATTCTCGGTTCCACTACTTGGAAGCGCACAGGAGTCGGAGCTGGATCTTGACAGTCTCCACGTTCCTCGTCCAAGCAGTATACGTGCACTCCTTGCAACTCCTACGCACACCGTTCATCGCTACTGGCGAAAGTTCGATGATGCTGTCATGCGTCCAATGTTTGGGGGCCGGGGTTTTGTTCCTTTTGTTCCAGGTTGTCGAGCAGCAGATAAGGGTGGGCGGTGTGAGTATCACATGTTTGCTGGGAATGGGCATGGAGCGGAGCAGTCAGGATGTGTTGATTCTCTCTTGCCTTCTGTTTGCTGCCCTCTTATTTTTGGTACAAATCATTCTGGGATGTCTGGAGATGGGACACAAAGCTTATTGGGCAATGGAAAGTTGCAACATGAACAGAGCAAAGACAAGGGGAGTCGAGGCTACTTTAATTGCAACAATTACAAGAATGGTATCCATTCAGACTCAGGCTAG | 1860 | 42.9 | MTPILSYVVSKWQALSTSDHASVVSINLFVALLCACIVIGHLLEETRWMNESITALLIGLFTGVIILLVSGGKSSHLLLFSEDTFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMLFGAIGTLVSCLIISLGAFQFFKKMDVGSLDIADVLAIGAIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSLDLSNVDARVALHFIGSFFYLFSTSTLLGVFVGLLSAYVIKKLYFGRHSTDREVALMILMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFISETFIFVYVGMDALDIEKWSFVSDSPGTSVAVSAILLGLVMVGRAAFVFPLSFISNLAKKSAGEKITFREQVIIWWAGLMRGAVSIALAYHQFTRAGHTQLRGNAMMITSTITVVLFSTMVFGLLTKPLINCLLPQLKHTTSMLSDPATPKSFSVPLLGSAQESELDLDSLHVPRPSSIRALLATPTHTVHRYWRKFDDAVMRPMFGGRGFVPFVPGCRAADKGGRCEYHMFAGNGHGAEQSGCVDSLLPSVCCPLIFGTNHSGMSGDGTQSLLGNGKLQHEQSKDKGSRGYFNCNNYKNGIHSDSG | 619 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 31022407 | 31029382 | + | CmPI595203_03g022360.1 | Cmu03g2236 | 413022 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu03g2236 | 619 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 17 | 527 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0090333(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Cmu03g2236 | 619 | PRINTS | Na+/H+ exchanger signature | 153 | 163 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu03g2236 | 619 | PRINTS | Na+/H+ exchanger signature | 113 | 121 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu03g2236 | 619 | PRINTS | Na+/H+ exchanger signature | 84 | 95 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu03g2236 | 619 | PRINTS | Na+/H+ exchanger signature | 98 | 112 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu03g2236 | 619 | MobiDBLite | consensus disorder prediction | 581 | 600 | - | - | |
| Cmu03g2236 | 619 | NCBIfam | sodium/hydrogen exchanger 3 | 24 | 446 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu03g2236 | 619 | Gene3D | - | 145 | 197 | - | - | |
| Cmu03g2236 | 619 | Pfam | Sodium/hydrogen exchanger family | 32 | 443 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu01g1089 | Cmu-Chr1:17624650 | Cmu03g2236 | Cmu-Chr3:31022407 | 8.80E-35 | dispersed | |
| Cmu03g2236 | Cmu-Chr3:31022407 | Cmu09g0609 | Cmu-Chr9:5585183 | 4.10E-197 | dispersed | |
| Cmu03g2236 | Cmu-Chr3:31022407 | Cmu06g0531 | Cmu-Chr6:5886007 | 6.00E-217 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu03g2236 | - | - | - | 0.0 |