Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g2236 ATGACACCCATTTTGAGTTATGTTGTGTCCAAATGGCAAGCGTTGTCCACTTCTGATCATGCCTCTGTTGTTTCCATTAACTTGTTTGTGGCACTTCTCTGTGCTTGTATTGTGATTGGTCATCTTCTTGAGGAGACCCGGTGGATGAACGAGTCCATCACTGCACTGTTGATTGGTCTGTTTACTGGAGTCATCATTTTACTGGTCAGTGGTGGGAAAAGTTCGCATCTATTGCTCTTTAGCGAAGACACATTCTTCATTTATCTTCTGCCACCGATTATATTCAACGCTGGGTTTCAGGTGAAAAAGAAGCAGTTCTTTGTTAACTTTATGACCATTATGCTGTTTGGTGCAATTGGTACATTAGTCTCTTGTTTGATCATCTCGTTAGGAGCTTTTCAGTTCTTTAAGAAAATGGATGTTGGATCACTGGATATTGCTGATGTTTTAGCAATTGGAGCTATATTTGCCGCAACAGATTCTGTATGCACATTGCAGATATTAAATCAGGATGAAACCCCTCTACTTTACAGTCTAGTATTTGGGGAAGGTGTAGTAAATGATGCCACATCTGTAGTGCTTTTCAATGCAATTCAGAGCTTAGATCTCAGTAATGTTGATGCAAGAGTTGCTTTACATTTTATTGGGAGCTTCTTTTATCTATTTTCAACAAGCACTTTACTCGGAGTATTTGTTGGCCTGCTGAGTGCTTATGTAATCAAAAAGTTATATTTTGGCAGGCACTCGACAGATCGTGAGGTTGCTCTTATGATACTCATGGCATATCTTTCATATATGCTGGCTGAATTATTAGATTTGAGTGGCATTCTCACAGTGTTCTTTTGTGGAATTGTAATGTCACATTATACCTGGCATAACGTGACTGAGAGCTCAAGAGTTACCACCAAGCATGCTTTTGCTACCTTATCCTTCATTTCTGAGACGTTTATCTTCGTTTATGTCGGCATGGATGCATTGGACATTGAGAAGTGGAGCTTTGTTAGTGATAGTCCGGGGACATCAGTTGCTGTGAGCGCAATATTATTAGGCCTGGTCATGGTTGGAAGAGCTGCCTTTGTTTTTCCATTATCATTTATATCAAATTTAGCTAAAAAATCGGCAGGCGAGAAAATAACCTTCAGGGAACAAGTTATCATTTGGTGGGCTGGTCTCATGAGAGGTGCTGTTTCTATTGCTCTAGCTTATCATCAGTTCACCCGAGCTGGGCACACTCAACTACGAGGGAATGCAATGATGATCACTAGTACCATAACTGTTGTCCTCTTCAGCACAATGGTGTTTGGATTATTGACCAAGCCTCTTATTAACTGTTTGCTACCTCAACTAAAACACACCACCAGCATGCTATCGGACCCTGCGACTCCAAAATCATTCTCGGTTCCACTACTTGGAAGCGCACAGGAGTCGGAGCTGGATCTTGACAGTCTCCACGTTCCTCGTCCAAGCAGTATACGTGCACTCCTTGCAACTCCTACGCACACCGTTCATCGCTACTGGCGAAAGTTCGATGATGCTGTCATGCGTCCAATGTTTGGGGGCCGGGGTTTTGTTCCTTTTGTTCCAGGTTGTCGAGCAGCAGATAAGGGTGGGCGGTGTGAGTATCACATGTTTGCTGGGAATGGGCATGGAGCGGAGCAGTCAGGATGTGTTGATTCTCTCTTGCCTTCTGTTTGCTGCCCTCTTATTTTTGGTACAAATCATTCTGGGATGTCTGGAGATGGGACACAAAGCTTATTGGGCAATGGAAAGTTGCAACATGAACAGAGCAAAGACAAGGGGAGTCGAGGCTACTTTAATTGCAACAATTACAAGAATGGTATCCATTCAGACTCAGGCTAG 1860 42.9 MTPILSYVVSKWQALSTSDHASVVSINLFVALLCACIVIGHLLEETRWMNESITALLIGLFTGVIILLVSGGKSSHLLLFSEDTFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMLFGAIGTLVSCLIISLGAFQFFKKMDVGSLDIADVLAIGAIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSLDLSNVDARVALHFIGSFFYLFSTSTLLGVFVGLLSAYVIKKLYFGRHSTDREVALMILMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFISETFIFVYVGMDALDIEKWSFVSDSPGTSVAVSAILLGLVMVGRAAFVFPLSFISNLAKKSAGEKITFREQVIIWWAGLMRGAVSIALAYHQFTRAGHTQLRGNAMMITSTITVVLFSTMVFGLLTKPLINCLLPQLKHTTSMLSDPATPKSFSVPLLGSAQESELDLDSLHVPRPSSIRALLATPTHTVHRYWRKFDDAVMRPMFGGRGFVPFVPGCRAADKGGRCEYHMFAGNGHGAEQSGCVDSLLPSVCCPLIFGTNHSGMSGDGTQSLLGNGKLQHEQSKDKGSRGYFNCNNYKNGIHSDSG 619
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 31022407 31029382 + CmPI595203_03g022360.1 Cmu03g2236 413022
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g2236 619 PANTHER SODIUM/HYDROGEN EXCHANGER 17 527 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0090333(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
Cmu03g2236 619 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu03g2236 619 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu03g2236 619 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu03g2236 619 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu03g2236 619 MobiDBLite consensus disorder prediction 581 600 - -
Cmu03g2236 619 NCBIfam sodium/hydrogen exchanger 3 24 446 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu03g2236 619 Gene3D - 145 197 - -
Cmu03g2236 619 Pfam Sodium/hydrogen exchanger family 32 443 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1089 Cmu-Chr1:17624650 Cmu03g2236 Cmu-Chr3:31022407 8.80E-35 dispersed
Cmu03g2236 Cmu-Chr3:31022407 Cmu09g0609 Cmu-Chr9:5585183 4.10E-197 dispersed
Cmu03g2236 Cmu-Chr3:31022407 Cmu06g0531 Cmu-Chr6:5886007 6.00E-217 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g2236 - - - 0.0