Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu03g2276 | ATGGGAGCAGTTGGCAGTGGAGGTCAGATAGCATATGGTAGCAACCTGTACCATCCCAACCAAATGACTGTAGGCCCGACTTCCGGATCTGTCGTTACATCAGTCGGAGGTATTCAGTCTACAAGTCAACCTGGTGGAGCTCAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAACAGCTTCAGCAGCAGCTCCAGACTTTTTGGGTAAATCAATACCAAGAGATTGAGAAGGTAACAGACTTCAAGAACCATAGTCTTCCGTTAGCAAGAATCAAGAAGATCATGAAGGCTGACGAGGACGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCATACTGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATAGTGCCGAGGGAGGATCTGAAAGACGAAGTACTCACATCGATTCCAAGAGGATCAATGACAGTTGGGGGGCCTGGAGATGCACTTCCTTACTGCTATATGCCGTCTCAGCATGCACCTCAAGTTGGGGCACCTGGAATGATCATGGGTAAGCCTGTGATGGACCCAGCTATCACGCACAAGATCAAACCCCTCCTGATCAATAGTAGCTTGCAGCATGGAGCTGAAGGCGAACCACGGAGTCTCCTCCGAAGCAAGCTCACAATGATGCCACCACACACACACGACAGACCGACAGGAGAATTTACACTGAAGATTTGA | 819 | 47.25 | MGAVGSGGQIAYGSNLYHPNQMTVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSMTVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPAITHKIKPLLINSSLQHGAEGEPRSLLRSKLTMMPPHTHDRPTGEFTLKI | 272 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 31474871 | 31476498 | + | CmPI595203_03g022760.1 | Cmu03g2276 | 413062 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu03g2276 | 272 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 66 | 182 | IPR050568 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
Cmu03g2276 | 272 | FunFam | Nuclear transcription factor Y subunit gamma | 57 | 170 | - | - | |
Cmu03g2276 | 272 | Pfam | Core histone H2A/H2B/H3/H4 | 53 | 155 | IPR007125 | GO:0003677(InterPro) | |
Cmu03g2276 | 272 | Gene3D | Histone, subunit A | 54 | 170 | IPR009072 | GO:0046982(InterPro) | |
Cmu03g2276 | 272 | SUPERFAMILY | Histone-fold | 58 | 164 | IPR009072 | GO:0046982(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu03g2276 | Cmu-Chr3:31474871 | Cmu09g1355 | Cmu-Chr9:20187367 | 2.20E-62 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5961 | PF00808 | CBFD_NFYB_HMF | 3.10E-18 | CL0012 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu03g2276 | K08066 | - | csv:101209664 | 375.941 |