Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu03g2342 ATGAAGCACTTCTTCTTGAAGTTCAATGAACTAACAAAGTCACTAAAAAGATGGAGAAACTCTGAAAATGCTTCTGATGTATGTGGGAGAGAAGCTGCAGAAGCAATGGCAAAGTCTGCAAAGAAGAAGGATCTGGTCATCCATGGTTCCGGGAGTATGAATATCAATGGTTCGAGCAACTTTGTCTCGAGTTTTTCGAAGAGGGGTGAGAAAGGAATCAACCAGGACTGCTGCATTGTGTGGGAGGAATTTGGATGTCAAAAGGATATGATATTTTGTGGGGTTTTTGATGGTCATGGACCATGGGGTCATTTCGTTGCAAAGAAGGTTAGAGAGTCAATGCCAACTACTTTGCTTTGCAATTGGCAAGAAGCACTTGTTCAAACTTCTCTTCACCCACATTTGGAACTCAACTCAGCTAAAACACATCTTCATTTCAATTTGTGGGAGCATTCTTATATAGAAGCTTGTGCTGTGGTGGATCAAGAACTCGAGCGACACCGTAAAATCGACACGTTTCATAGTGGAACAACGGCACTTTCCATCGTTCGACAAGGTGATACAATTGTCATAGCAAACCTTGGTGACTCCCGGGCCGTCTTGGCTACAACTTCTAATGATGGAAACTCGACGCCGTCACCAATTCAGCTTACTGTCGATTTCAAACCGAATCTACCTCAGGAAGCTGAAAGGATAACACAATGCAATGGGAGAGTTTTCTGCTTGCAAGATGAACCAGGGACTCCCCGTCTTTGGTTGCCGAACGGGGAAACGCCGGGGCTGTCAATGTCGAGATCGTTTGGCGATTTTTGCGTTAAGCATTTTGGACTTATTTCTGTGCCTGATGTAACACAAAGAAGTTTAACCAACAAAGACTTATTTGTTGTACTTGCAACTGATGGGATATGGGACGTCGTCACGAATCAAGAAGCTGTGCAAATCGTACATTCCACTGTTGATAGACAAAAATCTGCTCGACGACTGGTTGATTATGCTACTCGTGCATGGAAGCGAAAGAGGCCGAATATTGCAACAGACGACATGTCGGTTATCGTCCTCTACCTACATTCTTCACATTTGCATCAACAACCTTTTTGTGTATTGTAG 1107 43.54 MKHFFLKFNELTKSLKRWRNSENASDVCGREAAEAMAKSAKKKDLVIHGSGSMNINGSSNFVSSFSKRGEKGINQDCCIVWEEFGCQKDMIFCGVFDGHGPWGHFVAKKVRESMPTTLLCNWQEALVQTSLHPHLELNSAKTHLHFNLWEHSYIEACAVVDQELERHRKIDTFHSGTTALSIVRQGDTIVIANLGDSRAVLATTSNDGNSTPSPIQLTVDFKPNLPQEAERITQCNGRVFCLQDEPGTPRLWLPNGETPGLSMSRSFGDFCVKHFGLISVPDVTQRSLTNKDLFVVLATDGIWDVVTNQEAVQIVHSTVDRQKSARRLVDYATRAWKRKRPNIATDDMSVIVLYLHSSHLHQQPFCVL 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32051469 32053342 - CmPI595203_03g023420.1 Cmu03g2342 413128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu03g2342 368 Pfam Protein phosphatase 2C 85 334 IPR001932 -
Cmu03g2342 368 CDD PP2Cc 60 355 IPR001932 -
Cmu03g2342 368 FunFam Probable protein phosphatase 2C 34 52 357 - -
Cmu03g2342 368 ProSiteProfiles PPM-type phosphatase domain profile. 61 355 IPR001932 -
Cmu03g2342 368 SUPERFAMILY PP2C-like 58 356 IPR036457 -
Cmu03g2342 368 SMART PP2C_4 53 353 IPR001932 -
Cmu03g2342 368 PANTHER PROTEIN PHOSPHATASE 41 353 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cmu03g2342 368 Gene3D - 49 358 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1730 Cmu-Chr2:31174190 Cmu03g2342 Cmu-Chr3:32051469 2.90E-78 dispersed
Cmu03g2342 Cmu-Chr3:32051469 Cmu06g0475 Cmu-Chr6:5320025 7.00E-96 dispersed
Cmu03g2342 Cmu-Chr3:32051469 Cmu02g1517 Cmu-Chr2:28882863 3.80E-142 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu03g2342 - - - 0.0