Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0096 ATGGCTTTTTTGTGTTGTCATTTCTCCATTTTTCTTGTTGTTGGGCTTCTTTCAAATTCCCAGTTTTTGAGAGCTGAGCTTGATGATCAAATCACTATGTCCAACATTAGAGAGGAGCTTCAAGTGCCTGGGTGGAGCTCCAATATCTCTGAGTACTGCTCTTGGAAAGGTGTTCATTGTGGTTTGAATCACTCCATGGTTGAAACTCTTGATCTTTCTGGTCATTCTCTTAGAGGTAACCTAACTCTGATTTCTGAGCTCAAAGCTCTGAAATGGCTTGACCTATCCTACAATGACTTCCACGGCGAGATTCCATCGAGTTTTTCGAACTTACTGGAGCTGGAATTCCTTGATTTGTCTTTGAACAAGTTTGATGGTTCGATCCCGCCCGAGTTTGGTGGTCTCAAGAACCTCAAATCATTGAACCTCTCCAATAATCTTTTGGTGGGAGAAATTCCAGATGAGCTTCAAGGCTTAGGGAAGTTGCAGGATTTTCAAATTTCCAGCAACAGGTTGAGTGGTTTAATTCCAAGCTGGGTTGGAAATTTGAGTCATCTACGTGTTTTTACAGCCTATGAGAATGACTTTGGCGGTGTAATTCCTGATAATCTTGGTTCAGTTTCTGTGCTCCAAGTGTTGAATCTGCATACCAACAGGCTTGAAGGCATGATTCCCCGAAGCATTTTCACTTCGGGAAAGCTTGAGATTTTGGTTCTTACACAAAACAGATTGGCTGGCAATATTCCTGAAGAGATTGGGAACTGCAAAAGGCTTACTAGCGTTCGAATCGGGAACAATAATCTTGTTGGTGCGATTCCTCCAGCCATTGGACATGTTAGTAGCCTTGCTTACTTTGAAGTGGATAGCAATCACCTTTCAGGCAATATACCGTCTCAGTTTTCGCAGTGCTCTAATCTTACTCTGCTTAATCTAGCCTCGAATGGGTTCACTGGTGTGATTCCTCCTGAACTTGGAGAGCTGATGAATCTTCAGGAGCTTATTCTTTCTGGCAATAGCCTGTATGGTGACATTCCTAGATCGATGCTTGGATGCAAAAATCTCAACAAGCTTGATTTAAGCAGCAATAGATTTAATGGAACTATTCCTTCAGATATCTGCAATATATCAAGATTGCAGTACTTGCTTTTGGAACAGAATTCAATAAAAGGAGAGATACCCAATGAGATTGGAAAATGTACAAAGCTTCTTGACCTGCGGCTCGGTAGTAACTATCTAACTGGAAGCATCCCTTCTGAGATCGGTCGTATTAAGAACTTACAGATAGCTTTGAACTTGAGCTTCAACCATCTAAATGGACCTGTGCCTCCTGAGTTGGGGAAACTTGATAAACTGGTTTCTTTAGATTTATCGAACAATCATCTCTCGGGCGATATCCCTTCTGAGCTCAAGGGCATGTTAAGCTTGATAGAGGTGAATTTTTCAAATAATCTGCTTACTGGTTCAATTCCATTTTTTGTTCCATTCCAGAAAAGTGCAAACTCCAGCTTTCTGGGGAACGAAGGCCTTTGCGGGGTGCCACTAAGCATTTCGTGTAAGAATTCGATTGGTTCAGACAATCAAGATTACCATCACAAGGTCTCATACAAGATCATCCTGGCTGTCATCGGTTCCGGGCTAGCAGTTTTTGTATCGGTTACTATAGTTGTTTTACTTTTTGTGATGAAAGAAAAGCAGGAGAAAGCAGCAAAATCTTCAGGGACCACAGATGATGAAACTATCAACGATCAACCACCAATAATAGCAGGAAATGTCTTCGATGACAATCTCCGACAGGAAATAGATCTTGATACAGTCGTGAAAGCAACTTTGAAGGACTCAAACAAGCTCATCTTTGGCACTTTTAGTAGTGTTTATAAGGCAGTTATGCCTTCGGGTATGATCGTATCAGTTAAGAGACTAAAATCCATGGATAAGACTATCATTCATCATCAAAGCAAGATGATTAGAGAGCTTGAAAGGCTTGGCAAACTGAGTCATGCTAATCTTTTGCAACTCATTGGATATGTAATATATGAAGATGTGGCTCTGTTGCTTCACAAGTACTTACCCAATGGAACATTGGCTCAGCTTCTTCATGAATCCACAAAGAAACCTGAATATGAACCTGATTGGCCCACAAGATTTTCTATTGCCATTGGAGCAGCAGAAGGGCTTGCTTTCCTTCATCATGTGGCCATAATCCATCTTGATATCTCATCATCTAATGTTCTTTTAGATGCTAACTTCAAACCTTTGGTTGGAGAAGTTGAGATCTCAAAACTTTTAGATCCATCAAGAGGAACTGCAAGTATTAGTGCAGTGGCAGGTTCATTTGGCTACATTCCACCAGAATATGCATATACAATGCAAGTTACGGCCCCGGGAAATGTTTATAGCTACGGTGTCATCTTGCTTGAGATCCTCACTACCAGATTGCCAGTTGATGAGGAGTTTGGTGAAGGAGTAGACTTGGTGAAATGGGTGCATAGTGCTCCTTCGAGGGGTGAAACACCTGAACAGATACTCGATTCCCGGCTGAGCACGGTGTCATTTGGCTGGAGGAAGGAGATGCTTGCAGCTCTCAAGATTGCATTGCTCTGCACTGACAGCATACCAGCCAAAAGGCCTAAAATGAAGAAGGTGGTGGAAATGCTTCTGGAGATCAAGCAAAATTGA 2676 41.85 MAFLCCHFSIFLVVGLLSNSQFLRAELDDQITMSNIREELQVPGWSSNISEYCSWKGVHCGLNHSMVETLDLSGHSLRGNLTLISELKALKWLDLSYNDFHGEIPSSFSNLLELEFLDLSLNKFDGSIPPEFGGLKNLKSLNLSNNLLVGEIPDELQGLGKLQDFQISSNRLSGLIPSWVGNLSHLRVFTAYENDFGGVIPDNLGSVSVLQVLNLHTNRLEGMIPRSIFTSGKLEILVLTQNRLAGNIPEEIGNCKRLTSVRIGNNNLVGAIPPAIGHVSSLAYFEVDSNHLSGNIPSQFSQCSNLTLLNLASNGFTGVIPPELGELMNLQELILSGNSLYGDIPRSMLGCKNLNKLDLSSNRFNGTIPSDICNISRLQYLLLEQNSIKGEIPNEIGKCTKLLDLRLGSNYLTGSIPSEIGRIKNLQIALNLSFNHLNGPVPPELGKLDKLVSLDLSNNHLSGDIPSELKGMLSLIEVNFSNNLLTGSIPFFVPFQKSANSSFLGNEGLCGVPLSISCKNSIGSDNQDYHHKVSYKIILAVIGSGLAVFVSVTIVVLLFVMKEKQEKAAKSSGTTDDETINDQPPIIAGNVFDDNLRQEIDLDTVVKATLKDSNKLIFGTFSSVYKAVMPSGMIVSVKRLKSMDKTIIHHQSKMIRELERLGKLSHANLLQLIGYVIYEDVALLLHKYLPNGTLAQLLHESTKKPEYEPDWPTRFSIAIGAAEGLAFLHHVAIIHLDISSSNVLLDANFKPLVGEVEISKLLDPSRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVILLEILTTRLPVDEEFGEGVDLVKWVHSAPSRGETPEQILDSRLSTVSFGWRKEMLAALKIALLCTDSIPAKRPKMKKVVEMLLEIKQN 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1048246 1051048 - CmPI595203_04g000960.1 Cmu04g0096 413681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0096 891 Gene3D Ribonuclease Inhibitor 280 526 IPR032675 -
Cmu04g0096 891 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 689 891 - -
Cmu04g0096 891 Pfam Protein tyrosine and serine/threonine kinase 614 884 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu04g0096 891 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 580 688 - -
Cmu04g0096 891 Gene3D Ribonuclease Inhibitor 28 176 IPR032675 -
Cmu04g0096 891 Gene3D Ribonuclease Inhibitor 177 271 IPR032675 -
Cmu04g0096 891 SMART LRR_typ_2 327 351 IPR003591 -
Cmu04g0096 891 SMART LRR_typ_2 159 182 IPR003591 -
Cmu04g0096 891 SMART LRR_typ_2 375 399 IPR003591 -
Cmu04g0096 891 SMART LRR_typ_2 448 471 IPR003591 -
Cmu04g0096 891 SMART LRR_typ_2 207 231 IPR003591 -
Cmu04g0096 891 SMART LRR_typ_2 111 134 IPR003591 -
Cmu04g0096 891 SMART LRR_typ_2 87 110 IPR003591 -
Cmu04g0096 891 SMART LRR_typ_2 135 158 IPR003591 -
Cmu04g0096 891 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 227 522 - -
Cmu04g0096 891 ProSiteProfiles Protein kinase domain profile. 610 891 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g0096 891 Gene3D Transferase(Phosphotransferase) domain 1 689 891 - -
Cmu04g0096 891 SUPERFAMILY Protein kinase-like (PK-like) 611 886 IPR011009 -
Cmu04g0096 891 SUPERFAMILY L domain-like 254 515 - -
Cmu04g0096 891 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 66 890 IPR050647 -
Cmu04g0096 891 Pfam Leucine rich repeat 89 148 IPR001611 GO:0005515(InterPro)
Cmu04g0096 891 Pfam Leucine rich repeat 329 388 IPR001611 GO:0005515(InterPro)
Cmu04g0096 891 CDD STKc_IRAK 619 888 - -
Cmu04g0096 891 Pfam Leucine Rich Repeat 450 472 IPR001611 GO:0005515(InterPro)
Cmu04g0096 891 Pfam Leucine Rich Repeat 161 183 IPR001611 GO:0005515(InterPro)
Cmu04g0096 891 Pfam Leucine Rich Repeat 233 255 IPR001611 GO:0005515(InterPro)
Cmu04g0096 891 Pfam Leucine Rich Repeat 430 448 IPR001611 GO:0005515(InterPro)
Cmu04g0096 891 Pfam Leucine Rich Repeat 305 327 IPR001611 GO:0005515(InterPro)
Cmu04g0096 891 FunFam Nuclear pore complex protein NUP107 30 178 - -
Cmu04g0096 891 Gene3D Phosphorylase Kinase; domain 1 579 688 - -
Cmu04g0096 891 ProSitePatterns Tyrosine protein kinases specific active-site signature. 733 745 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu04g0096 891 SUPERFAMILY L domain-like 43 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1576 Cmu-Chr3:16014613 Cmu04g0096 Cmu-Chr4:1048246 3.30E-46 dispersed
Cmu04g0096 Cmu-Chr4:1048246 Cmu05g0390 Cmu-Chr5:3338379 4.50E-56 dispersed
Cmu04g0096 Cmu-Chr4:1048246 Cmu06g0748 Cmu-Chr6:8852076 4.80E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75433 PF00069 Pkinase 3.50E-27 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0096 - - - 0.0