Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0185 ATGTTGAATTATATTCATCGTCGGAATCTGATCGAAGATCGCGATTTGATGCAGCCATTATTAGTGTTGTCAAAGTCTGATAATAAGTACGACGGATCTGAGATGTTTAACAACACATCAAAAGGGGAAAACGATTCTCACGGAGGAGGAATGAATGTAAATGCACAAAATTTCGTGAAAAATCCACCGGATTCTCTAAGAAGAATCGATCAAATCGCGAAAAACGGCGTAAATTCCGGTAATCTGACGTCGACAGTGAATGCTGAGATTCACTCCAGTCAGCCAGGGGGATCGATTGCGCCAATTCCGACCAGCACATCAGCGACGAACTTGAAGAACCTAAACAATAACAACAACAGCAACAATAACAACAACAACTCTGGTTTCATGGCGACGAAGGGCGGTGGCAGCGGAGGAAATAATTATCGTTGTGACAGCATGGAGACGCCGGGAGTGGTGATAAAGCCGCACACTGGCGGAGATGTGCGGTGGGATGCCATTAACATGGTGTCGAAAGGAGGGGCTTTGAATCTAAGCCATTTCCAGTTATTGAAGAGGCTTGGTTATGGGGATATTGGAAGCGTTTATTTGGTTGAATTGAGAGGAACTGATACATTTTTCGCCATGAAAGTGATGGATAAAGCTTCATTAGCAAGTAGGAATAAGCTTTTGAGGGCACAAACAGAAAGGGAAATTCTAGGGCTTTTGGATCATCCATTTTTGCCTACTCTCTATTCCTATTTTGAAACAGATAAGTTCTATTGTTTGGTTATGGAGTTTTGTAGTGGTGGTAATCTTCATTCTCTTCGACAAAAGCAACCTAATAAGTATTTTACAGAAGAAGCTGCCAGATTCTATGCATCGGAGGTTCTATTAGCACTGGAATACCTTCATATGTTAGGCATAGTCTATAGAGATTTGAAACCCGAAAATCTCTTAATCCGAGACGAAGGTCACATCATGCTCTCCGATTTCGATCTCTCTCTCCGCTGCTCCGTCAGCCCCACTCTTGTCAAATCCTCCTCCGTCAACGTCAACGGCAGCTCCGCCACCGGCAATACCGGCGCCAATGGCGGAGGCAGCGGTGGTATCCTCGACGACGAGTTCGTCGTCCACGGCTGTATGCAGCCTTCCAACTTCCTCCCTCGCATCCTCCCTTCCAAGAAGAACCGCAAGTCCAAATCCGACTTCGGCCTCTTCGTCGGCGGCTCCCTCCCTGAACTCATGGCCGAGCCTACCAACGTCAGATCTATGTCCTTCGTCGGCACTCACGAGTATCTCGCTCCGGAGATCATCCAAGGCGAAGGCCACGGCAGCGCCGTCGACTGGTGGACCTTCGGAATCTTCCTCTACGAGCTTCTCCACGGAACCACGCCTTTCAAAGGATCTGGAAATAGAGCTACTCTGTTCAACGTCGTCGAACAACCACTCAGATTCCCCGATGCGCCGCAAGTCAGTCTAGCCGCTAGAGATCTGATCAGAGGGCTCCTCGTCAAGGAGCCGCAAAAAAGAATCGCATATCGGAGAGGCGCAACTGAGATTAAACAGCATCCTTTCTTCGACGGAGTGAATTGGGCGTTGGTGAGAAGCGCTATGCCGCCGCACGTCCCGGAGCCCCTCGATTTCTCGCAGTTCGCTAGAAAGAAGAACTGCACCGGAGCGGCGGAAGACAAGAAACCGGTGGAAATACCGGCGGCTACGTCGTCGACCACGGCAACCCCGGCGGCGGCGGAGAATTCTTCGCCTTCTACTGGTAGCGATCCCAATTACGTGGATTTTGAGTACTTCTAG 1791 49.13 MLNYIHRRNLIEDRDLMQPLLVLSKSDNKYDGSEMFNNTSKGENDSHGGGMNVNAQNFVKNPPDSLRRIDQIAKNGVNSGNLTSTVNAEIHSSQPGGSIAPIPTSTSATNLKNLNNNNNSNNNNNNSGFMATKGGGSGGNNYRCDSMETPGVVIKPHTGGDVRWDAINMVSKGGALNLSHFQLLKRLGYGDIGSVYLVELRGTDTFFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKYFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVNVNGSSATGNTGANGGGSGGILDDEFVVHGCMQPSNFLPRILPSKKNRKSKSDFGLFVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVEQPLRFPDAPQVSLAARDLIRGLLVKEPQKRIAYRRGATEIKQHPFFDGVNWALVRSAMPPHVPEPLDFSQFARKKNCTGAAEDKKPVEIPAATSSTTATPAAAENSSPSTGSDPNYVDFEYF 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4056104 4058222 - CmPI595203_04g001850.1 Cmu04g0185 413770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0185 596 MobiDBLite consensus disorder prediction 92 134 - -
Cmu04g0185 596 MobiDBLite consensus disorder prediction 564 588 - -
Cmu04g0185 596 CDD STKc_phototropin_like 179 541 - -
Cmu04g0185 596 MobiDBLite consensus disorder prediction 553 596 - -
Cmu04g0185 596 Gene3D Phosphorylase Kinase; domain 1 179 264 - -
Cmu04g0185 596 SUPERFAMILY Protein kinase-like (PK-like) 178 554 IPR011009 -
Cmu04g0185 596 FunFam serine/threonine-protein kinase D6PK-like 265 332 - -
Cmu04g0185 596 SMART serkin_6 181 520 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g0185 596 Gene3D Transferase(Phosphotransferase) domain 1 265 334 - -
Cmu04g0185 596 FunFam Serine/threonine-protein kinase AGC1-5 179 264 - -
Cmu04g0185 596 ProSiteProfiles Protein kinase domain profile. 181 520 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g0185 596 Gene3D Transferase(Phosphotransferase) domain 1 395 538 - -
Cmu04g0185 596 FunFam Serine/threonine-protein kinase AGC1-7 413 538 - -
Cmu04g0185 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 302 314 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu04g0185 596 PANTHER FLIPPASE KINASE 1-RELATED 115 544 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cmu04g0185 596 Pfam Protein kinase domain 182 334 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g0185 596 Pfam Protein kinase domain 369 520 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0185 Cmu-Chr4:4056104 Cmu10g2144 Cmu-Chr10:27438753 1.70E-147 dispersed
Cmu04g0185 Cmu-Chr4:4056104 Cmu01g2066 Cmu-Chr1:33628500 2.10E-150 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75440 PF00069 Pkinase 1.00E-21 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0185 - - - 0.0