Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0277 ATGCAGAGTAGATCACTTCAAGAGGGAGAGAGAGAGAGAGAGAGCAGAATTTCAATCACTGTAGCATCTTATCACTTTCTTCACCGATTTCCCAACCCTTCTTCCGATTTGATTCCTGCCGCAGGTGTAGGGATTTTGCTTCCTGACGAACACTATTGTGCTTGGGGTCGAACGACAACGATATATGTTCATTGGGCAGTTCGTACTGATGTAGAATGGCTGAATAATCTAAGAGCTGGTCTAGCTTTTTTAAATCTGTGCTGCATCACTGATATGATGGTTAAGGAAAATTTGCTGCAGAGAGTTGATGACAATGCTAAAGAGAATGATTGTTCGAGTATTGGGAATGAAGATTTGGGTTCTCAGTCTCGCCACAGTGTAGGGAAGGAATCTGGGGTCAGTTGTCGTGTGTGTCAATGTATTGAATCTGACAGAAGAGGTGATGCTGTTTTAGGATTTCTGGGCATCACTCCTCCAATTATGGAAGCAAGAAAATGTGATGGGGATTCTAAGCCTGAGAAGCAAAGTGCAGAAAATGTTTATGATGGTTCTGAGCTGAAAAAAGATGTTAAAGGGGATTCTGGTTCAATTAAGTTCATAGGCCCTAATGGGGAGGTTTTCATTTGCAAAGCTGATATCGAAATGGGTTCATGTCATCATGAAGATGTATTAGTGGAGCTTGGGTGTTCTTGCAAGAGTGACCTTGCACTTGTACACTATGCATGTGCTCTCAAGTGGTTTGTCAGCCATGGATCTACAGTTTGTGAAATCTGTGGATGTACTGCAGAAAATATTAGAACTGATGACTTTAGAAAGGTTGTGAGTTCTTTGAAAGAATATGAAGCTTTGAGGGAAAGAACTGTTAGTGGGGAACCTAATCCTATGCAGACTATTGCTGGTACCGATATAGATCCTGATGCTGTTGCTGCTGTCCGCAGGCAGCGGCTAAGTGAAATCTCATTGTGGTTCAGTCCTCATAATTATAGTAGCAACAATAACTCTACTGCAGCCTCCCAGGTTGTTTCTGAACATCTGAATACCATCTCAGAAAATGTTGTTCATTCCGAAAATCCTGCAACCAGGTGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACAGGGCTGCTTACTGTTACGCTTGCTTGCCTCATAGCTCCTCGTGTGGGGAAGAAAACTGCGAAAAGTGGCCTTCATATTCTTCTTGGAGGAGTTTGTGCGTTAACAGTTGTGGTTTTCTTCCGCTTTTTTGTGCTAACTAGGATAAAATATGGACCTGCACGATACTGGGCCATTTTGTTCGTCTTTTGGTTCCTGGTGTTTGGTATTTGGGCGTCGAGGACACATGCTGCTCATACGACGTAA 1362 43.1 MQSRSLQEGERERESRISITVASYHFLHRFPNPSSDLIPAAGVGILLPDEHYCAWGRTTTIYVHWAVRTDVEWLNNLRAGLAFLNLCCITDMMVKENLLQRVDDNAKENDCSSIGNEDLGSQSRHSVGKESGVSCRVCQCIESDRRGDAVLGFLGITPPIMEARKCDGDSKPEKQSAENVYDGSELKKDVKGDSGSIKFIGPNGEVFICKADIEMGSCHHEDVLVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCTAENIRTDDFRKVVSSLKEYEALRERTVSGEPNPMQTIAGTDIDPDAVAAVRRQRLSEISLWFSPHNYSSNNNSTAASQVVSEHLNTISENVVHSENPATRWAVEGTGILLATGLLTVTLACLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7370573 7378900 + CmPI595203_04g002770.1 Cmu04g0277 413862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0277 453 ProSiteProfiles Zinc finger RING-CH-type profile. 201 265 IPR011016 GO:0008270(InterPro)
Cmu04g0277 453 Pfam RING-variant domain 224 258 IPR011016 GO:0008270(InterPro)
Cmu04g0277 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 268 IPR013083 -
Cmu04g0277 453 SMART ringv_2 218 259 IPR011016 GO:0008270(InterPro)
Cmu04g0277 453 SUPERFAMILY RING/U-box 226 261 - -
Cmu04g0277 453 PANTHER ZINC FINGER, RING-CH-TYPE 118 442 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0277 Cmu-Chr4:7370573 Cmu11g0649 Cmu-Chr11:7165268 6.10E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0277 - - - 0.0