Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g0396 ATGGAGGTCGATACTAATTCTGGGAAACCGTCGAAACAGATTGGGGGTGGTCAGGTTTGTCAGATCTGCAGTGATTCCGTCGGCACGACGGCCGACGGCGAGCCGTTTGTTGCGTGTGATGTTTGTGCATTTCCAGTCTGCCGTCCATGTTATGAGTACGAGAGGAAAGATGGGAATCAGTCTTGCCCTCAATGCAAGACCAAATACAAGTGGCATAAAGGAAGTCCTCCGGTTAATGGAGAGGCAGGGGAAGATGGTGATGGTAATGGAGTGGCAGGGGCTCAAGAAAGGCATCATAAGATGCCAGAGCGCACCCTTAGCTGGGATACTAATTATGATAAGGAAGGATCTTTTAATCACATTCCTTTGCTCACCACTGGACGATCTGTTTCTGGAGAACTCTCGGCTGCATCTCCTGAGCGGCTCTCCATGGCATCTCCCGAAAGTGGGAGCCGGGCTAACTATAGAATCATGGATCAATCGAGAGACTCGGGTTCGGCTAGATTTGGCAATGTGGCCTGGAAAGAGAGAATAGATAGTTGGAAGGTGAAGCAAGACAAGAGTGTGCCGCCAATGAGTGTCAGTCATGCACCTTCTGAAGGGAGGGGTGGAGCTGATTTTGATGCCAGCACAGATGTCGTAATCGATGATTCTTTACTAAATGATGAAGCTCGCCAGCCTTTGTCGAGGAAGGTTTCTATTCCATCCTCTAGGATTAATCCTTATAGGATGGTCATCGTTCTACGGCTTATTATTCTTTGCATCTTCTTGCACTATCGGATCACAAATCCAGTTCCAAATGCCTTTGCTCTGTGGTTAATATCAGTGATTTGTGAGATTTGGTTTGCTATATCTTGGATTTTGGATCAGTTCCCCAAGTGGCTCCCGGTCAATCGTGAGACATATCTTGATAGACTTGCTCTAAGATATGATCGTGAAGGAGAGCCATCTCAGTTGGCTGCTGTCGACATATTTGTCAGTACTGTCGACCCTCTGAAAGAACCTCCCCTTGTCACAGCCAATACGGTCCTATCAATTCTCTCTGTCGACTATCCAGTCGATAAAGTTTCTTGCTATGTATCAGATGATGGAGCTGCCATGTTAACATTTGAAGCCTTATCCGAAACATCAGAATTTGCAAGAAAATGGGTTCCTTTCTGCAAGAAGTACAGCATTGAGCCAAGAGCACCAGAGTGGTATTTTGCTCAGAAGATTGATTACTTAAAGGACAAGGTTCAACCATCATTTGTGAAGGAACGGAGAGCAATGAAGAGAGAATATGAGGAGTTTAAAATTCGTATCAATGGACTTGTAGCTAAGGCTCAGAAAGTTCCAGATGAAGGGTGGGTCATGCAAGATGGTACGCCATGGCCTGGAAATAACACGAGAGATCATCCAGGAATGATACAGGTTTTCTTGGGGCACAGTGGAGGACTTGATACTGAGGGTAATGAGCTTCCACGTTTAGTTTATGTTTCTCGTGAGAAACGTCCTGGTTTCCAACATCACAAAAAGGCTGGTGCTATGAATGCACTTGTTCGTGTATCTGCTGTTCTTACCAATGGACCCTTCTTGTTAAATCTTGATTGTGATCACTACATAAACAACAGTAAAGCGTTGCGGGAAGCTATGTGTTTTATGATGGATCCTAATCTTGGTAAATCAGTTTGCTATGTTCAGTTTCCTCAGAGGTTTGATGGAATTGATAGAAATGATCGATATGCCAACCGAAACACTGTTTTCTTTGATATCAATCTTCGAGGCTTGGATGGTATCCAAGGTCCGGTGTATGTGGGAACGGGATGTGTTTTCAATCGAACTGCATTGTATGGCTATGAACCCCCTCTCAAGCCCAAGCATAAAAAGCCAGGGCTATTCTCCAGTTGCTTTGGGAAATCAAAAAAGAAAAGTTCTAAATCGAAAAGAAAGGATTCTGATAAGAAGCAAACTAGTAAAAATGTTGATCCCACCGTGCCAATATTCAACCTTGAAGATATTGAGGAAGGAGTTGAAGGTGCCGGGTTTGATGACGAGAAATCGCTACTAATGTCACAAATGAGCCTGGAGAAGAGGTTTGGTCAATCAGCTGTATTTGTTGCTTCCACACTAATGGAAAATGGTGGCGTGCCACAGTCTGCCACTCCGGAATCTCTCCTTAAAGAAGCAATTCATGTCATCAGTTGCGGATATGAGGATAAAACAGACTGGGGAAGTGAAATTGGATGGATCTATGGTTCTGTCACAGAAGATATTTTGACAGGGTTCAAGATGCATGCCCGTGGTTGGAGATCAATCTATTGCATCCCGGACCGTCCCGCATTTAAAGGATCTGCTCCCATTAATCTTTCTGATCGTCTTAACCAAGTGCTTCGGTGGGCGTTAGGTTCGGTTGAAATTCTTTTCAGTCGGCATTGCCCTATGTGGTACGGTTATGGTGGACGGTTGAAATGGCTCGAGAGATTTGCTTATGTTAACACCACCATTTATCCAATAACGTCCATTCCGCTTCTTGCCTATTGTACCTTACCTGCAATATGTCTGCTCACCGGAAAGTTTATTATTCCCCAGATCAGCAATCTTGCCAGCATCTGGTTCATTTCGCTCTTTCTTTCCATCTTTGCTACTGGTATTCTGGAAATGAGATGGAGTGGTGTTGGAATCGATGAATGGTGGAGAAACGAGCAGTTCTGGGTTATTGGAGGTGTGTCGGCCCATCTTTTCGCTGTCTTCCAAGGTCTTCTTAAAGTTCTTGCTGGAATTGATACCAATTTCACGGTTACTTCGAAAGCATCTGACGAAGATGGAGATTTTGCTGAGCTCTACATGTTCAAGTGGACCACTCTTCTCATTCCCCCAACTACTCTCCTAATTATCAACATAGTTGGAGTTGTTGCTGGAATTTCTTATGCCATCAACAGTGGCTATCAGTCTTGGGGACCCCTTTTCGGCAAACTGTTCTTCGCTTTCTGGGTGATTATTCATCTGTATCCCTTCCTTAAGGGTCTGATGGGTCGCCAGAACCGAACCCCCACAATTGTGGTTGTATGGTCTATCCTCCTTGCCTCAATCTTCTCCCTTTTATGGGTTCGGATTGATCCCTTCACAACTCGGGTAACTGGTCCCGATGTGGAACAGTGTGGAATCAACTGCTAA 3153 44.78 MEVDTNSGKPSKQIGGGQVCQICSDSVGTTADGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKWHKGSPPVNGEAGEDGDGNGVAGAQERHHKMPERTLSWDTNYDKEGSFNHIPLLTTGRSVSGELSAASPERLSMASPESGSRANYRIMDQSRDSGSARFGNVAWKERIDSWKVKQDKSVPPMSVSHAPSEGRGGADFDASTDVVIDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLIILCIFLHYRITNPVPNAFALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVQPSFVKERRAMKREYEEFKIRINGLVAKAQKVPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGLFSSCFGKSKKKSSKSKRKDSDKKQTSKNVDPTVPIFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPDRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPMWYGYGGRLKWLERFAYVNTTIYPITSIPLLAYCTLPAICLLTGKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12608437 12613827 - CmPI595203_04g003960.1 Cmu04g0396 413981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g0396 1050 ProSiteProfiles Zinc finger RING-type profile. 20 66 IPR001841 -
Cmu04g0396 1050 SUPERFAMILY RING/U-box 7 88 - -
Cmu04g0396 1050 SUPERFAMILY Nucleotide-diphospho-sugar transferases 336 852 IPR029044 -
Cmu04g0396 1050 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 440 613 IPR029044 -
Cmu04g0396 1050 FunFam Cellulose synthase 439 613 - -
Cmu04g0396 1050 CDD mRING-HC-C4C4_CesA 18 68 - -
Cmu04g0396 1050 Pfam Cellulose synthase 322 1043 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cmu04g0396 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 93 IPR013083 -
Cmu04g0396 1050 MobiDBLite consensus disorder prediction 623 655 - -
Cmu04g0396 1050 Pfam Zinc-binding RING-finger 10 86 IPR027934 -
Cmu04g0396 1050 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 230 1019 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cmu04g0396 1050 MobiDBLite consensus disorder prediction 73 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0396 Cmu-Chr4:12608437 Cmu09g0397 Cmu-Chr9:3817256 0.00E+00 dispersed
Cmu04g0396 Cmu-Chr4:12608437 Cmu02g0903 Cmu-Chr2:11686605 2.40E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g0396 K10999 - csv:101211779 2110.11