Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu04g0424 | ATGTTTGTCCCCAAACAAATTCCTCTTCCTCATCCTCAAACACCAAAATCCACCATGGGAAGAGGAAGAGTCGAGATCAAGAAGATTGAGAATATCAACAGCAGACAAGTTACTTTCTCTAAACGCCGTAATGGGTTGATGAAAAAGGCCAAAGAATTATCAGTTCTTTGTGATGCTGAAGTCGCCATTGTTGTCTTCTCCAGCACTGGAAGGCTTTATGAATTCTCCAGCACTAGCATGGAACATACACTTTCAAGGTACAGAGGACAGGGCATGGAGTTGGATTTTCCAAAAGAGACTTTGGACCACCCAACACAACTGCCACCATCTGATTCTGATGCAAAGTCGTCTGAGGAGGAGATCGCAAGGCTAAAGTTAGCATATATGCAGATGAGAGGCCAGGAACTGGATAGTTTGAGCTTTATAGACCTACAAAACTTAGAAAATCAGTTGCGGGAAGGGATCGTATCTATCAAAGACAAGAAGGAGACATTACTTTTGGAGCAGCTCCAAAGGTGTAGGTCACAGCTAGAGGAGTTTCAGCAGAGAAACAATGCAACACTCCTGGAGTCCAGCCCCCTTCAGAGATCCTACCTTTCGGATTCGAAAACCGCTTCTACGAACGAGACTGAGGCCGAGACCGAGGCAGAGGAAAATGACCGCTCAGAAATTTCCTTGCATCTGGGGTTGTCATTGAATGGTCGACAAAAAAGGAAACGATCGGTTGAAGGTGCGAGCAACGACACAACATGCAGTCAAGTAGACTTGGGAAGGGGATGA | 780 | 45.51 | MFVPKQIPLPHPQTPKSTMGRGRVEIKKIENINSRQVTFSKRRNGLMKKAKELSVLCDAEVAIVVFSSTGRLYEFSSTSMEHTLSRYRGQGMELDFPKETLDHPTQLPPSDSDAKSSEEEIARLKLAYMQMRGQELDSLSFIDLQNLENQLREGIVSIKDKKETLLLEQLQRCRSQLEEFQQRNNATLLESSPLQRSYLSDSKTASTNETEAETEAEENDRSEISLHLGLSLNGRQKRKRSVEGASNDTTCSQVDLGRG | 259 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 13984727 | 13988361 | + | CmPI595203_04g004240.1 | Cmu04g0424 | 414009 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu04g0424 | 259 | ProSitePatterns | MADS-box domain signature. | 21 | 75 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu04g0424 | 259 | PRINTS | MADS domain signature | 41 | 56 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu04g0424 | 259 | PRINTS | MADS domain signature | 21 | 41 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu04g0424 | 259 | PRINTS | MADS domain signature | 56 | 77 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu04g0424 | 259 | MobiDBLite | consensus disorder prediction | 191 | 209 | - | - | |
Cmu04g0424 | 259 | FunFam | MADS-box transcription factor MADS-MC | 31 | 100 | - | - | |
Cmu04g0424 | 259 | SMART | madsneu2 | 19 | 78 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu04g0424 | 259 | Coils | Coil | 144 | 190 | - | - | |
Cmu04g0424 | 259 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 19 | 208 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cmu04g0424 | 259 | Pfam | K-box region | 118 | 185 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cmu04g0424 | 259 | Coils | Coil | 114 | 134 | - | - | |
Cmu04g0424 | 259 | MobiDBLite | consensus disorder prediction | 245 | 259 | - | - | |
Cmu04g0424 | 259 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 28 | 75 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu04g0424 | 259 | Gene3D | - | 31 | 97 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu04g0424 | 259 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cmu04g0424 | 259 | MobiDBLite | consensus disorder prediction | 191 | 259 | - | - | |
Cmu04g0424 | 259 | SUPERFAMILY | SRF-like | 20 | 89 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu04g0424 | 259 | ProSiteProfiles | K-box domain profile. | 107 | 198 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cmu04g0424 | 259 | CDD | MADS_MEF2_like | 20 | 88 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cmu04g0424 | 259 | ProSiteProfiles | MADS-box domain profile. | 19 | 79 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu04g0424 | Cmu-Chr4:13984727 | Cmu10g1986 | Cmu-Chr10:25546374 | 1.70E-32 | dispersed | |
Cmu04g0424 | Cmu-Chr4:13984727 | Cmu01g2353 | Cmu-Chr1:35604554 | 5.00E-32 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5983 | PF01486 | K-box | 5.00E-11 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu04g0424 | - | - | - | 0.0 |