Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu04g0488 | ATGGGTTCTTCTGTTGCTGCAATGGGCATGGTTTCAGACTCCAAATTCCATGTTCTTGCTGTTGATGATAGCGTTATCGATAGGAAATTGATTGAAAGGCTCCTTAAAACCTCCTCTTACCAAGTCACTACGGTTGATTCTGGAAGTAAAGCTTTGGAGTTTCTGGGATATGACCCTGGAAATAACTCGATTCCTTCTGTTTCATCTAACCATCATCATCATCATCAGGAAGTGGATGTGAATCTTGTTATTACTGATTACTGTATGCCTGAGATGACTGGCTATGATTTGTTGAAGAAGATCAAGGGGTCTACAGCTCTGAGAAACATACCTGTTGTGATTATGTCATCTGAGAATGTGCCTGCAAGAATCAATAGATGCTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTCCGACTTTCGGATGTCAACCGGCTTAGACCCCACATGTTGAAAACCAAACTCAAATGTGGCAAACCAGAAAAAGCAGTAGAAAATGAGCCTGATTCAGGAAGCCAATCCCAAGCACTAGAGCAACAACATCAACAACGACATGAACAAGAACAATTACGACCGCTATCGCAGCAGATCCCGACATCGCTGCAAGATCAAGATGAATTGCAATCTGTACCACTTCTGCCAACACCAACACAGGAGCAAGAACAGTTGCAATTACTCCCGCCAACACCACCGCAACAATCAAACAACAACAAGAGGAAGGCAATGGAAGATGGACTTTCTCCCGATAGAACAAGGCCTAGATACAATGGTATTACCACCATGGTGTAG | 795 | 43.14 | MGSSVAAMGMVSDSKFHVLAVDDSVIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDPGNNSIPSVSSNHHHHHQEVDVNLVITDYCMPEMTGYDLLKKIKGSTALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLRPHMLKTKLKCGKPEKAVENEPDSGSQSQALEQQHQQRHEQEQLRPLSQQIPTSLQDQDELQSVPLLPTPTQEQEQLQLLPPTPPQQSNNNKRKAMEDGLSPDRTRPRYNGITTMV | 264 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 16934590 | 16936048 | - | CmPI595203_04g004880.1 | Cmu04g0488 | 414073 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu04g0488 | 264 | MobiDBLite | consensus disorder prediction | 159 | 192 | - | - | |
Cmu04g0488 | 264 | SMART | REC_2 | 16 | 149 | IPR001789 | GO:0000160(InterPro) | |
Cmu04g0488 | 264 | Gene3D | - | 17 | 249 | - | - | |
Cmu04g0488 | 264 | MobiDBLite | consensus disorder prediction | 215 | 264 | - | - | |
Cmu04g0488 | 264 | SUPERFAMILY | CheY-like | 14 | 148 | IPR011006 | - | |
Cmu04g0488 | 264 | CDD | REC_typeA_ARR | 18 | 148 | - | - | |
Cmu04g0488 | 264 | ProSiteProfiles | Response regulatory domain profile. | 17 | 153 | IPR001789 | GO:0000160(InterPro) | |
Cmu04g0488 | 264 | MobiDBLite | consensus disorder prediction | 215 | 243 | - | - | |
Cmu04g0488 | 264 | Pfam | Response regulator receiver domain | 18 | 144 | IPR001789 | GO:0000160(InterPro) | |
Cmu04g0488 | 264 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 13 | 211 | IPR045279 | GO:0009736(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu04g0488 | Cmu-Chr4:16934590 | Cmu10g2355 | Cmu-Chr10:29898023 | 1.20E-54 | dispersed | |
Cmu04g0488 | Cmu-Chr4:16934590 | Cmu06g1714 | Cmu-Chr6:28166954 | 1.20E-41 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5987 | PF00072 | Response_reg | 1.30E-18 | CL0304 | Cmu | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu04g0488 | K14492 | - | csv:101220999 | 431.024 |